Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9 107 3e-18 seq5 96.9 5e-15 >seq9 Length=31548187 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | |||||| | ||| | || | ||||| |||| ||| || Sbjct 3307347 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 3307406 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||||||| ||||| || || | || |||||||| || || Sbjct 3307407 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 3307466 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| ||||| || ||||| || Sbjct 3307467 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 3307526 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 3307527 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 3307568 >seq5 Length=38039368 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | |||||| |||| ||| || Sbjct 36491228 TCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCC 36491169 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | ||||||||||| ||| ||||| || | || | |||||| ||| || Sbjct 36491168 ATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGA 36491109 Query 69870 TAGACCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAACGTTTCAATGTGTCAT 69925 ||||| ||||| || || ||||| | ||| |||||| | | || |||| Sbjct 36491108 GAGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTATCAT 36491053 Query 69926 ATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || ||||| |||||||||||| ||||| | || || |||||| Sbjct 36491052 AAATTCCCTCAATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 36491006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908696963680