Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 129 7e-25 >seq9 Length=31548187 Score = 129 bits (142), Expect = 7e-25 Identities = 308/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 1132983 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1132924 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || |||| | || | |||||| | | | ||| || || Sbjct 1132923 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCAT-GAGCAGCCG 1132865 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 || | || |||| ||||||| | ||| ||| |||||| |||| ||| | || Sbjct 1132864 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1132805 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| ||||| ||| |||| | |||| || || || || || ||||| | | Sbjct 1132804 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1132746 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAG----TCTT-GAAGAGCTCCACGGCAAA 122663 ||| | | | || | || | ||| || || | || ||| || ||| || Sbjct 1132745 GGAC-GCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 1132691 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || |||||||||||| || ||||| || || || || |||||| || || ||||| Sbjct 1132690 GTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 1132631 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || ||||||||||| || ||||||||||| ||||| Sbjct 1132630 GAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTC 1132571 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || | ||||| ||||||||| Sbjct 1132570 GACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 1132537 Score = 114 bits (126), Expect = 2e-20 Identities = 198/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | || ||| |||||||| | | || ||||| ||| Sbjct 28185807 TCAAAACGTCCAGGTCTGAGTAAAGCAGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 28185866 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || || || ||||| | Sbjct 28185867 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGATTCAAA 28185926 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| | ||| | |||| | || Sbjct 28185927 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCTCTTTGCCTCCCA 28185980 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || || | | ||| Sbjct 28185981 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAG 28186040 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| || || ||||||||||||||||| Sbjct 28186041 AGATCACGAACCCGGGAGGCACCAACTCCGACAAACATCTCCACAAA 28186087 Score = 109 bits (120), Expect = 7e-19 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || | | || ||||| || || || |||||||||||| | Sbjct 31090281 CAAATCCATCCATCTCAGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCC- 31090339 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | | | ||||||| || ||| | || || |||||||| |||||||||||||| || Sbjct 31090340 -CCTCCGAGCCCAGCACCACGCTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGAT 31090398 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || || || | ||||| |||||| ||||| Sbjct 31090399 GCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACC 31090458 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || |||| ||| || || | | || | ||| || |||||| || | || || Sbjct 31090459 GACGAACAGCTCAACGAACTCGGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCC 31090518 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 |||| ||| || || || || ||||| || || || ||| || |||| ||| || Sbjct 31090519 GGCGACGGCACGCGCCAGCAGTGTCTTCCCGGTTCCGGGCGGGCCGACGAGCAGGCATCC 31090578 Query 11836 TCGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 31090579 CTTGGGGATCTTGGCCCC 31090596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031905795200