Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 188 8e-43 >seq9 Length=31548187 Score = 188 bits (208), Expect = 8e-43 Identities = 588/890 (66%), Gaps = 29/890 (3%) Strand=Plus/Plus Query 59545 CCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAG 59604 ||| ||| ||| | | || || || |||||||| | | |||| | || ||||| | Sbjct 1132107 CCGAGCGATTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGG 1132166 Query 59605 CGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGG 59664 || | | || |||||| | | |||||| | |||||| ||| ||| | | |||| Sbjct 1132167 CGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGG 1132226 Query 59665 A---CAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGG 59721 | | ||| | |||||||| || ||| || || || ||||||||||| | Sbjct 1132227 ATGCCGCGCTGTCGTCCGACGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCCG 1132286 Query 59722 CGAGTGATGGAATTGTGATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGA 59778 | || || || ||| | || || | | | | | | | ||| || || ||| Sbjct 1132287 CCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGG 1132343 Query 59779 TTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAG 59837 | |||||||| || | ||||||| | ||| ||| || |||| |||||||| ||| Sbjct 1132344 TCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAG 1132402 Query 59838 ACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTC 59897 | ||||||||| || |||| | || || || | ||||||| | || ||| Sbjct 1132403 ATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAGGACCGCCTCTTC 1132462 Query 59898 CGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT- 59956 || ||||| || || |||||| || | || || || |||||||||| ||||| Sbjct 1132463 CGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATC 1132522 Query 59957 GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCT 60015 || | | |||| || || | || ||| | || || || ||||| || || |||| Sbjct 1132523 GACGGCGGCGAGCGC--TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCT 1132580 Query 60016 TCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCC 60075 ||||||| || || ||||| || || ||||||||||| ||||| || ||||||||||||| Sbjct 1132581 TCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCC 1132640 Query 60076 TGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGA 60135 | | |||||||||||||| || ||||| |||||||| ||||| || || || || Sbjct 1132641 TCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGC-CTGC 1132699 Query 60136 C-GCTCTATTCACACCT-ATTGGAAAAAT-GCCCTTCCAAGGATATTCACAAGATTGT-T 60191 | ||||| | ||| || || | | | || | | || |||| || Sbjct 1132700 CTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCACG--CGTCCAGGAGATCGTCG 1132757 Query 60192 CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATA 60251 | | | | || || | ||||| |||||| || || ||||| || | ||| | Sbjct 1132758 CCGACGCCGTG-GACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTC 1132816 Query 60252 GGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATG 60308 || ||| ||| | |||| |||||||| |||| ||||| ||||| |||||| Sbjct 1132817 GGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATG 1132876 Query 60309 GCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACC 60368 || | | || | | || || ||| ||| ||||| ||||||||||||||| | Sbjct 1132877 GCGC--TCGGGTGCAAGA-AGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTC 1132933 Query 60369 ATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||| || | || |||||||||||||| |||||||| ||||| || || Sbjct 1132934 ATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1132983 Score = 113 bits (124), Expect = 5e-20 Identities = 271/401 (68%), Gaps = 18/401 (4%) Strand=Plus/Minus Query 60027 TCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCC 60086 || ||||| || || ||||||||||| ||||| || |||||||||||||| | |||||| Sbjct 8707704 TCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCC 8707645 Query 60087 AACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTC 60145 |||||||| || ||||| ||||||||||| || || || || || | ||||| Sbjct 8707644 AACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTCCTCTACGA 8707586 Query 60146 ACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCACAAGATTGT-TCAGTGGGCTTG 60202 | ||| | || || | | | | | | | |||| || | | | | | Sbjct 8707585 CCTCCTCCGCGGCAA--GCTCGACGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGT- 8707529 Query 60203 TGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGC 60262 || | ||||| |||||| || || ||||| || | ||| | || ||| ||| Sbjct 8707528 CGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGG 8707469 Query 60263 TGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATG--GCCCAGTTT 60317 | |||| |||||||| |||| ||||| ||||| ||||||| || | | | Sbjct 8707468 CGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTG 8707409 Query 60318 GGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTG 60377 ||||| || ||| ||| ||||| ||||||||||||||| |||||| || Sbjct 8707408 CAAGAAG-----ATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTG 8707354 Query 60378 GAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | || |||||||||||||| |||||||| ||||| || || Sbjct 8707353 CAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 8707313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524717721280