Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq4 244 1e-59 seq5 123 3e-23 seq11 105 8e-18 >seq4 Length=26741765 Score = 244 bits (270), Expect = 1e-59 Identities = 272/363 (75%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || || ||||||||||| || | ||||||| ||| || ||||| |||||| Sbjct 12116216 AGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 12116275 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || || || ||||| || || || ||||| ||||| || | |||||||| |||||| | Sbjct 12116276 ACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 12116335 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 || || ||||| | | | ||||||||| | || || | || || || | || ||| Sbjct 12116336 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 12116395 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 176976 || ||||| | ||| || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 12116396 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAA 12116455 Query 176977 TCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCA 177036 ||||| | || | | ||| || ||| ||| |||| |||||| | |||||||| Sbjct 12116456 TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCT 12116515 Query 177037 AACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 || |||||||||||||| |||||||| |||||||||||||||||||| || ||||| ||| Sbjct 12116516 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 12116575 Query 177097 GCT 177099 ||| Sbjct 12116576 GCT 12116578 Score = 241 bits (266), Expect = 2e-58 Identities = 297/401 (74%), Gaps = 4/401 (1%) Strand=Plus/Minus Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 |||||||| |||| || || || || ||||||||||| ||||||||| || || || Sbjct 188882 TGGGAACTGAGTTCCAT-CTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCTCCT 188824 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGAT 176574 || | || || | || |||||| | | || || | ||||||||| |||||||||| Sbjct 188823 GTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGAT 188764 Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 ||||||||| | || || || |||| |||||||||||| |||||||||| |||||||| Sbjct 188763 GGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCAT 188704 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 ||||| || ||||| ||||| || ||| | || ||||| ||||| || | || || || Sbjct 188703 AACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCCTA 188644 Query 176695 TTC-TCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTT-AGAGAGACAACCGAAA 176752 ||| || ||||| || | | || || || | ||||| || || || || |||| Sbjct 188643 TTCAAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGTTCAGGGAAACCACTGAAA 188585 Query 176753 ACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAG 176812 ||||||| || | ||||||| ||| || ||||| |||||||| || || ||||| | Sbjct 188584 ACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGG 188525 Query 176813 CTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCT 176853 | || || ||||| ||||| || | |||||||| |||||| Sbjct 188524 CCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq5 Length=38039368 Score = 123 bits (136), Expect = 3e-23 Identities = 127/165 (77%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 176914 TGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAAC 176973 ||||| ||||| | ||| || | || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 176974 CAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGT 177033 || ||||| | || | | ||| || ||| ||| |||| |||||| | |||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 177034 GCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 ||||| |||| ||||||||| |||||||| |||||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 19383 GCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTGGTGGATTGG-GTGAT 19441 || ||||| || ||||| | ||||||||||| ||||||| | ||||||||| | | Sbjct 13567851 GCTTGTGAAGTATGTGTTCGCGTATGCCCTATAGATCTACCTCTTGTGGATTGGAGATTT 13567910 Query 19442 GAACAAACAGACAAAGAAGAAAGAACTTAGAAATTATTCGATAGACTTTGGAGCATGTAT 19501 ||| || | | || | |||| || | |||||| || || || |||| ||||| Sbjct 13567911 GAA-AAGGATATTAAAAGGAAACAATTGCTTAATTATAGTATTGATTTCGGAGTTTGTAT 13567969 Query 19502 TTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTATCCATGACAGAAGAATA 19561 || || |||| | || ||||| || || ||||||||| |||| ||||| |||||||| Sbjct 13567970 ATTTTGTAGTAATTATGTTGAGTACTGTCCGACAAACTGTTTATCAATGACTGAAGAATA 13568029 Query 19562 TGAATTGGCTACATTTGA 19579 |||| | |||| | ||| Sbjct 13568030 TGAACTTTCTACTTATGA 13568047 >seq11 Length=27185770 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 177019 GATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 177078 |||||| | |||||||| || |||||||||||||| |||||||| ||||||||||||||| Sbjct 25910919 GATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAAC 25910860 Query 177079 TTCCCACTTGACCTTGCTGCT 177099 ||||| || ||||| |||||| Sbjct 25910859 TTCCCTCTAGACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603494309475840