Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq4 230 3e-55 seq12 199 5e-46 seq11 149 8e-31 seq7 125 9e-24 seq1 122 1e-22 seq5 113 6e-20 seq3 98.7 1e-15 >seq4 Length=26741765 Score = 230 bits (254), Expect = 3e-55 Identities = 281/382 (74%), Gaps = 1/382 (0%) Strand=Plus/Minus Query 190025 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 190084 || ||||| | |||||||| |||||| |||||||| || || | || || || Sbjct 188865 CTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCT 188806 Query 190085 GTATTCCTTGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATC 190144 || ||| | | ||||| ||||||| || ||||||||||||||||||||||| || Sbjct 188805 GTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 188746 Query 190145 TCAGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCA 190204 || |||| |||||||| ||| |||||||||| ||||| ||||| ||||||||||| ||| Sbjct 188745 TCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCA 188686 Query 190205 TTCCATATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCATTATTC-TCTGCAATGCATGG 190263 || || ||| ||||||||| ||| | || | || | ||||| ||| |||||||| Sbjct 188685 TTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGG 188626 Query 190264 TTCACTTGTAACATCTTCTCTAATCAGAGAAACAACTGGTTTAGAGTCACAGAACTATGG 190323 ||| | ||||| ||| | | |||| ||||| |||| || || || | || Sbjct 188625 TTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 188566 Query 190324 TTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTTGG 190383 ||||| ||||| ||||| ||||| || || || || || || ||||||||||| ||||| Sbjct 188565 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 188506 Query 190384 TAGACTTATCTTCCAGTATGCT 190405 || | |||||||| |||||| Sbjct 188505 CCGATTAATCTTCCAATATGCT 188484 Score = 215 bits (238), Expect = 6e-51 Identities = 244/327 (75%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 190322 GGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCTGCTCATGGTTACTTT 190381 ||||||| ||||| ||||| ||||| || || || || || || ||||||||||| ||| Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 190382 GGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTTTACACTTCTTCTTA 190441 || || | |||||||| |||||| || |||||||| | ||||||||||||||| Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 190442 GCAGTATTCCCTGTAACCTGTGTATGGTTAACATCAATGGGTATTTGCACAATGGCATTC 190501 || | | |||||| | | ||||| || | | |||||| | || ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 190502 AACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGATGCACAAGGTAAAATTGTTCCA 190561 || |||| || ||||| || ||||| |||||||||||| |||||| || || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 190562 ACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAAAGAAAT 190621 || |||| ||| | | ||| | || || |||||||||||||||||||| ||| | ||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 190622 GCACACAACTTCCCACTAGACCTAGCT 190648 || ||||||||||| |||||||||||| Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGCT 12116575 Score = 113 bits (124), Expect = 6e-20 Identities = 127/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 182524 ATGCACACAATGTGTGAAGGCTTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGG 182583 |||||| |||| ||| ||||||||| ||||||||||||||| | ||||||||||| Sbjct 26638727 ATGCACTCAATATGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCTTGGGATGG 26638786 Query 182584 GTGCAAAGCAAAGCAAATTGCTTCCTCACCTAGA-ACTGAGGATTGTGTAGGATGTAAGA 182642 || ||||| ||||| ||||||| | || | | || | ||||||||||| ||||||| Sbjct 26638787 ATGTAAAGCCAAGCAGATTGCTTTCGTGCCAAAAGACCAAAGATTGTGTAGGTTGTAAGA 26638846 Query 182643 GATGTGAAACAGCATGTCCTACAGACTTTTTAAGTATTCGTGTTTACTT 182691 |||| ||| | | || ||| | ||||||||| || ||||| || Sbjct 26638847 GATGCGAATTTGTCTTCCCAACAAATTTTTTAAGTGCCCGCGTTTATTT 26638895 >seq12 Length=23490084 Score = 199 bits (220), Expect = 5e-46 Identities = 191/245 (78%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || |||| ||||| |||||||| || || |||||||| ||||||| || Sbjct 18718300 AATGTCACATTCCGTAAAAATTTATGATACATGTATAGGATGCACTCAATGTGCACGAGC 18718359 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 ||||||| | |||||||||||||| | ||||||||||| || ||||| ||||||||||| Sbjct 18718360 TTGTCCAATAAATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCCAAGCAAATTGC 18718419 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 |||| | || ||||| || |||| ||| || | ||||||||| ||| | || || || || Sbjct 18718420 TTCCGCGCCAAGAACCGAAGATTATGTGGGTTATAAGAGATGCGAATCCGCCTGCCCAAC 18718479 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGC 182724 ||| ||||||||| | || ||||| || || | || || || | ||||||| |||| | Sbjct 18718480 AGATTTTTTAAGTGTCCGCGTTTATTTAGGACCTGAGACAACCCGCAGCATGGCTCTATC 18718539 Query 182725 ATATT 182729 |||| Sbjct 18718540 TTATT 18718544 Score = 131 bits (144), Expect = 2e-25 Identities = 144/186 (77%), Gaps = 7/186 (4%) Strand=Plus/Plus Query 184424 TTAATACCAGATAAGAGTAAGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGG 184482 || ||||| ||||| || || | | || ||||| |||||||| ||||| ||||| |||| Sbjct 5432114 TTGATACCCGATAA-AGCAAATCTTGGTTTCAG-TTCCCTTGCGATGGGCCTGGGCGAGG 5432171 Query 184483 AGGCACTTGTCAGGTATCAGGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAA 184542 || || ||| | ||||| | ||||||||||| ||| | ||| ||||||||||||| || Sbjct 5432172 GGGAACATGTTAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAA 5432231 Query 184543 TTGCATCTCTATAGTAATCTTCCACTTTAGTTGGAGAATGCA---AGATGTATGGGGT-C 184598 || ||| || |||| || ||||| |||||||||| |||||| |||||| | ||| | Sbjct 5432232 TTCCATTTCGGTAGTCATTTTCCATTTTAGTTGGAAAATGCAGTTAGATGTTTAAGGTAC 5432291 Query 184599 TATCAG 184604 ||| || Sbjct 5432292 TATAAG 5432297 >seq11 Length=27185770 Score = 149 bits (164), Expect = 8e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 186513 TAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTACAACTT 186572 ||||||||| ||||| || ||||||||||||||||| | || || ||||| || || | Sbjct 24124767 TAGGACCTGGAGATTTCTTGGTTCATCATGCTATTGCTTTAGGTTTGCATACAACTACAT 24124708 Query 186573 TAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATAAGAAAG 186632 | || |||| |||| | | |||||||| ||||| ||| | || || ||||| |||| Sbjct 24124707 TGATTTTAGTAAAGGATACTTTAGATGCACTCGGTTCCAAATTAATGCCGGATAAAAAAG 24124648 Query 186633 ATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTTCTG 186692 |||| |||||| || ||||| || |||||||| || ||||||||||||| ||||| Sbjct 24124647 ATTTTGGATATAGTTTTCCTTGCGACGGTCCAGGTCACGGCGGTACTTGTGATATTTCTG 24124588 Query 186693 GTTGGGATGCTTTCTAT 186709 |||||| || || ||| Sbjct 24124587 CTTGGGACGCGTTTTAT 24124571 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 190580 AACAGAGCAAACCTTGGTATGGAAGTAATGCATGAAAGAAATGCACACAACTTCCCACTA 190639 ||| | || || |||||||||||||||||||| ||| | ||||| ||||||||||| ||| Sbjct 25910910 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 25910851 Query 190640 GACCTAGCT 190648 ||||||||| Sbjct 25910850 GACCTAGCT 25910842 >seq7 Length=32884216 Score = 125 bits (138), Expect = 9e-24 Identities = 142/186 (76%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 184424 TTAATACCAGATAAGAGTAAGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGG 184482 || ||||| ||||| || || | | || || | |||||||| |||| ||||| ||||| Sbjct 17289996 TTGATACCCGATAA-AGCAAATCTTGGTTTTCGCTTCCCTTGCAATGGGCCTGGGAGAGG 17289938 Query 184483 AGGCACTTGTCAGGTATCAGGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAA 184542 | || ||||| ||||| | ||||||||||| ||| | ||| ||||||||||||| || Sbjct 17289937 GGAAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAA 17289878 Query 184543 TTGCATCTCTATAGTAATCTTCCACTTTAGTTGGAGAATGCA---AGATGTATGGGGT-C 184598 || ||| || |||| || ||||| || ||||||| |||||| ||||| |||||| | Sbjct 17289877 TTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTAC 17289818 Query 184599 TATCAG 184604 ||| || Sbjct 17289817 TATAAG 17289812 >seq1 Length=46529941 Score = 122 bits (134), Expect = 1e-22 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 186908 TCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGGGCAACAGGATTTATGTTC 186967 || |||||||| ||||||||||| ||||| ||| | |||||||| || |||||||||||| Sbjct 4164261 TCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCGACTGGATTTATGTTC 4164320 Query 186968 CTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAA 187027 | ||||| ||| | || |||||||| || |||||||||||| | || ||||| ||| || Sbjct 4164321 TTAATTTCCTGGTGTGGATATTGGCAGGAATTAATTGAGACTTTAGCATGGGCTCATAAA 4164380 >seq5 Length=38039368 Score = 113 bits (124), Expect = 6e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 188723 TTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTATTAATTTACCTGTAGTTGATTGGGTAA 188782 ||||||||||||||||||| | || || ||||| || ||||| | || |||||| | Sbjct 13567849 TTGCTTGTGAAGTATGTGTTCGCGTATGCCCTATAGATCTACCTCTTGTGGATTGGAGAT 13567908 Query 188783 TGAATAAACAAACTAAGAAGAAGGAACTTAGAAATTATTCAATTGACTTTGGTGCTTGCA 188842 | | || | | ||| | ||| || | |||||| ||||| || || | ||| | Sbjct 13567909 TTGAAAAGGATATTAAAAGGAAACAATTGCTTAATTATAGTATTGATTTCGGAGTTTGTA 13567968 Query 188843 TTTTCTGTGGGAATTGTGTAGAATACTGTCCAACTAACTGTCTATCCATGACAGAAGAGT 188902 | || ||| | |||| ||| || |||||||| || |||||| |||| ||||| ||||| | Sbjct 13567969 TATTTTGTAGTAATTATGTTGAGTACTGTCCGACAAACTGTTTATCAATGACTGAAGAAT 13568028 Query 188903 ATGAACTATCTGTTTTTGACAGACATCAACTCAACTA 188939 ||||||| ||| || ||| | ||| || | || || Sbjct 13568029 ATGAACTTTCTACTTATGATCGTCATGAATTGAATTA 13568065 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 190463 GTATGGTTAACATCAATGGGTATTTGCACAATGGCATTCAACTTAAATGGTTTCAACTTT 190522 || ||||| || | | |||||| | || ||||| ||||| |||| || ||||| || Sbjct 16640596 GTTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTC 16640537 Query 190523 AACCAGTCTGTAGTTGATGCACAAGGTAAAATTGTTCCAACATGGGGCGATGTTCTTAAC 190582 ||||| |||||||||||| |||||| || || || |||| ||| | | ||| Sbjct 16640536 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAAC 16640478 Query 190583 AGAGCAAACCTTGGTATGGAAGTAATGCATGAAAGAAATGCACACAAC 190630 | ||||| |||| ||||||||||||||| ||| | ||||| ||| || Sbjct 16640477 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq3 Length=27098305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 181/257 (70%), Gaps = 9/257 (4%) Strand=Plus/Minus Query 184346 CATCACATACACGC-TTTCCAGATTCATGTTTGTGTATTAATTCTTCTCAAGGGTGTTTT 184404 ||||| || ||| | ||| || || |||| ||||| ||| | | || ||||||| Sbjct 16406660 CATCATATTCACACATTTACA-ATCTATGTGACTGTATAAATAATGTTGAAAAGTGTTTT 16406602 Query 184405 ATACTCTAGAAACTCACAATTAATACCAGATAAGAGTAAGT-TAGGATTCAGATTCCCTT 184463 || || | | || | || ||||| ||||| || || | | || || | ||||||| Sbjct 16406601 ATTTGCTCGCAGTTCCCGTTTGATACCCGATAA-AGCAAATCTTGGTTTTCGCTTCCCTT 16406543 Query 184464 GTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAGGATGGGATCATGTATTCCTTG 184523 | ||||| ||||| ||| || || | ||| |||| | | |||| |||| ||| | | Sbjct 16406542 GCGATGGGCCTGGACAAGG-GGAACATATCAAGTATTCGCCTAGGAT-ATGTTTTCTTAG 16406485 Query 184524 GTTTATTCTGGATGTATAATTGCATCTCTATAGTAATCTTCCACTTTAGTTGGAGAATGC 184583 ||||||||||||||| |||| ||| || ||| | || ||||| || ||||||| |||| Sbjct 16406484 ATTTATTCTGGATGTACAATTCCATTTCGATAATCATTTTCCATTTCAGTTGGAAAATGT 16406425 Query 184584 A---AGATGTATGGGGT 184597 | ||||| |||||| Sbjct 16406424 AGTTGGATGTTTGGGGT 16406408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631427105285920