Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq8 107 1e-18
seq9 98.7 7e-16
seq12 93.3 3e-14
>seq8
Length=30429317
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || ||||| || || || || || || || ||||| ||| |
Sbjct 9003589 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 9003530
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | || ||||| || ||| | || || || ||
Sbjct 9003529 GACACGATTGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGTATTCCACCTGACCA 9003471
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| ||||| ||||| || |||| ||||| | | ||||||||
Sbjct 9003470 GCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGGCGCACCCTCGCAGATTACAA 9003411
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 9003410 CATTCAGAAAGAGTCCAC 9003393
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || | || || ||||| || || || || ||||| || |
Sbjct 9003134 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 9003075
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| | ||||| ||| ||| ||||| || | | || || |||||
Sbjct 9003074 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATCA 9003015
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| ||||| || || || || | ||||| |||| ||||||||
Sbjct 9003014 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAA 9002955
Query 23790 CATACAAAAAGAGTCCACATTACA 23813
||| || || |||||||| || ||
Sbjct 9002954 CATCCAGAAGGAGTCCACCTTGCA 9002931
>seq9
Length=31548187
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || ||||| || || || ||||| ||||| ||||| ||| |
Sbjct 28421880 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 28421821
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | || ||||| || || | || || || ||
Sbjct 28421820 GATACAATTGACAATGTGAAGGCCAAGA-TTCAGGACAAGGAGGGCATTCCACCTGACCA 28421762
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||| | || ||||| ||||| ||||| || || | ||||| | | ||||||||
Sbjct 28421761 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 28421702
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 28421701 CATCCAGAAGGAGTCCAC 28421684
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||| | || ||||| || |||||||| || || || ||| ||
Sbjct 28421652 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGAGGTCGAGTCCTCG 28421593
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||| | || ||| | || | || | || ||||| || || | || || || ||
Sbjct 28421592 GACAAGATCGACAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGAATTCCCCCGGACCA 28421534
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| | || ||||| ||||| || || || || | ||| || | | ||||||||
Sbjct 28421533 GCAGCGCCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAA 28421474
Query 23790 CATACAAAAAGAGTCCACATTACA 23813
||| || || |||||||| || ||
Sbjct 28421473 CATTCAGAAGGAGTCCACCTTGCA 28421450
Score = 87.8 bits (96), Expect = 1e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || || || || || ||||| || |
Sbjct 28897758 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 28897817
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||| | | || || || ||||| || || | || || || ||
Sbjct 28897818 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 28897877
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || ||||| || || || || || || | ||||| | | |||||||||
Sbjct 28897878 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 28897937
Query 23791 ATACAAAAAGAGTCCACA 23808
|| || || |||||||||
Sbjct 28897938 ATCCAGAAGGAGTCCACA 28897955
>seq12
Length=23490084
Score = 93.3 bits (102), Expect = 3e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763
||||| ||||| | || ||||||||||||||||| ||||| |||||||| || ||||||
Sbjct 15023870 GACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTGGAA 15023929
Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
|| | ||||| | | ||| |||||||| || || ||||| ||
Sbjct 15023930 GATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAAC 15023973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009550566096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |