Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9 105 9e-18 >seq9 Length=31548187 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | ||| || | ||| |||| | | ||| |||| ||| || Sbjct 3307348 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 3307407 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||||||| ||||| || ||| | || |||||||| || || Sbjct 3307408 TTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGAG 3307467 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| | ||| || ||||| ||||| ||||| Sbjct 3307468 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGATT 3307527 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 3307528 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 3307568 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | ||||| || ||||| |||||||| | ||| | |||| Sbjct 3307666 AGTGCCAGCATTGAAAAGGGTCGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAGATG 3307725 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| || | ||||| || || ||||| | ||| || || || || | || | ||| | Sbjct 3307726 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 3307784 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| ||||| || |||||||| ||| | ||||| | ||| ||| | |||| Sbjct 3307785 ACATGTGCTGTGGCCTTTCAACAACCTTCCCGCCAAGTTTCAGGAGGTAAGATCTCTCCA 3307844 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| || ||||||||||||| || ||||| || || ||||| || Sbjct 3307845 GAGTCTTGAAACCAAAATAGTCATAATCGAAGTCCCTATCATAAATTAT 3307893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668695799680