Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9 102 1e-16 seq5 86.0 9e-12 >seq9 Length=31548187 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 3307348 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 3307407 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||||||| ||||| || ||| || |||||||| || || Sbjct 3307408 TTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGAG 3307467 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| ||||| || |||||||| Sbjct 3307468 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGATT 3307527 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 3307528 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 3307568 >seq5 Length=38039368 Score = 86.0 bits (94), Expect = 9e-12 Identities = 156/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | || ||| |||| ||| || Sbjct 36491227 CCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCCA 36491168 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||||||||| ||| ||||| ||| || | |||||| ||| || Sbjct 36491167 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGAG 36491108 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAGCGTTTCAATGTGTCATA 76929 || || ||||| || || ||||| | ||| |||||| | | || ||||| Sbjct 36491107 AGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTATCATA 36491052 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| || |||||||| ||||| | || || |||||| Sbjct 36491051 AATTCCCTCAATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 36491006 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 |||||||||||||| |||| | | | | ||| |||||||||||| ||| ||||| Sbjct 36491662 CTCTCTTTCATATTTCTTGTACAGATTC--TGAAACTCATCTCCCCAACAGTCAGCCAAA 36491605 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||| |||||| ||||| | ||||||||| | ||| | | |||| || ||| Sbjct 36491604 CCTGGAGCTTCATTGGGACAAAACAATGACCAGTTTTCATTATTTTGCACCCTTTCCATG 36491545 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 || ||||| || ||||| || ||| || ||||||| Sbjct 36491544 AACAGATCTGGAATCCAGAGCGCATAGAAAAGATCTC 36491508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934293059840