Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq4 293 3e-74 seq5 114 2e-20 seq1 104 3e-17 seq11 102 1e-16 >seq4 Length=26741765 Score = 293 bits (324), Expect = 3e-74 Identities = 281/360 (78%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 183823 GAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 183882 ||||||||||| || || || | ||||||| || |||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 183883 TACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTT 183942 || || ||||| || |||||||| || ||||| || | |||||||| |||||| ||| Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 183943 AACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTT 184002 ||||| ||||||||| | ||||||||| | ||||||||||| || || || || ||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 184003 ACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCC 184062 |||||| | ||| |||| |||||||| || || || || || || || |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 184063 ATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 184122 | ||||| | |||||||| || | || || ||||| || | ||||||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 184123 CTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 269 bits (298), Expect = 3e-67 Identities = 306/405 (76%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 183534 TGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGC 183593 |||||||||| || || || ||| ||||| ||||||||||| |||||| ||| || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 183594 ACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAG 183653 |||||||| ||||| |||||||| ||| || | || ||| | |||||||| ||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 183654 TGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGA 183713 |||||||||||| | || || | | || || |||| |||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 183714 GCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTC 183773 ||| |||||||| ||||| || || |||||| | ||||| |||||||| || | ||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 183774 TCTGTTC-AGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACT 183831 || ||| ||||| ||||| |||||| |||| || | || | | |||| | ||||||||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGTTCAGGGAAACCACT 188589 Query 183832 GAGTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATT 183891 || || || || | ||||||| || |||||||| |||||||| || || ||| Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 183892 GTCGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCT 183936 || || |||||||| || ||||| || | |||||||| |||||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq5 Length=38039368 Score = 114 bits (126), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 183997 TGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAAC 184056 ||||| |||||| | ||| |||| |||||||| || || || || || || || |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 184057 CAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGT 184116 || || | ||||| | |||||||| || | | || ||||| || | |||||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 184117 GCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAAC 184161 || ||||| |||||||| |||||||| |||||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq1 Length=46529941 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 |||| |||||| | | | ||||| ||||| ||||| || |||||||| || | |||| Sbjct 26428802 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 26428743 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 26428742 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 26428683 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || |||||| ||| || | || ||| ||||| | || ||||||| Sbjct 26428682 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCAGCAG 26428623 Query 186151 TGTCA 186155 | ||| Sbjct 26428622 TTTCA 26428618 >seq11 Length=27185770 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 184109 TCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTC 184168 ||||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 25910912 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 25910853 Query 184169 TCGACCTTGCTGCT 184182 | ||||| |||||| Sbjct 25910852 TAGACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622070306689440