Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq4 282 5e-71 seq5 114 2e-20 seq11 109 7e-19 >seq4 Length=26741765 Score = 282 bits (312), Expect = 5e-71 Identities = 282/366 (77%), Gaps = 0/366 (0%) Strand=Plus/Plus Query 178225 GAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 178284 |||||||| || |||||| | || | ||||||| || |||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 178285 TACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTC 178344 || || || || || ||||||||||| || || || | ||||||||||| || || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 178345 AACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTC 178404 |||||||| ||||| | ||||||||| | || || |||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 178405 ACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 178464 |||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 178465 ATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 178524 | | ||||| || || || | || || ||||| || | ||||||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 178525 CTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCT 178584 |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Query 178585 GCTGAA 178590 |||| Sbjct 12116579 CTTGAA 12116584 Score = 255 bits (282), Expect = 7e-63 Identities = 302/404 (75%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 177936 TGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGC 177995 |||||||||||| || || || ||||| ||||| ||||| ||| ||||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 177996 TCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTC 178055 ||| || || || || | ||||| ||| | |||| ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 178056 TGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGA 178115 ||| | |||||| | || || | | || ||||||| ||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 178116 GCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTC 178175 ||| |||||||| ||||| || || |||||||| || || |||||||| || | ||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 178176 TCTGTTCA-GTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACC 178233 || |||| |||| ||||| |||||| |||| || || | | | |||| | |||||||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGTTCAGGGAAACCACT 188589 Query 178234 GAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATC 178293 || |||||| | || | ||||||| || |||||||| |||||||| || || || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 178294 GTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 178337 || || ||||||||||| || || || | ||||||||||| || Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 >seq5 Length=38039368 Score = 114 bits (126), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 178399 TGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 178458 |||||||||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 178459 CAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGT 178518 || || | | ||||| || || || | | || ||||| || | |||||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 178519 GCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAAC 178563 || ||||| ||||||||| |||||||| |||||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq11 Length=27185770 Score = 109 bits (120), Expect = 7e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 178511 TCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTC 178570 ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 25910912 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 25910853 Query 178571 TTGACCTCGCTGCTGCTGAA 178590 | ||||| |||||| |||| Sbjct 25910852 TAGACCTAGCTGCTCTTGAA 25910833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596307110553920