Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq4 271 9e-68 seq11 102 1e-16 seq5 100 3e-16 >seq4 Length=26741765 Score = 271 bits (300), Expect = 9e-68 Identities = 276/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 169979 GAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 170038 |||||||| || ||||| || || | ||||||| || |||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 170039 TACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 170098 || || || || |||||||| ||||| || || || | ||||||||||| ||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 170099 AACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTC 170158 |||||||| ||||| | ||||||||| | || || |||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 170159 ACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCC 170218 || ||| | ||| | || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 170219 ATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 170278 | | ||| | || ||||| || | || || ||||| || | ||||||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 170279 CTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCT 170338 ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 226 bits (250), Expect = 3e-54 Identities = 294/404 (73%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 169690 TGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGC 169749 |||||||||| || | | ||||||||| || |||||||| |||||| || || || Sbjct 188886 TGAGTGGGAACTGAGTTC-CATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 169750 TCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTC 169809 ||| ||||| || || ||||||||||| || | ||||| |||| ||||| ||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 169810 TGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGA 169869 ||| | ||||||| | || || || | || || |||| ||| | || ||||| || || Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 169870 GCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTC 169929 ||| |||||||| ||||| || || |||||| | ||||| || || || || | || || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 169930 TCTGTT-TAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCG 169988 || || || || ||||| ||| | || || || ||| | || | |||||||| | Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTG 188588 Query 169989 AGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCG 170048 | ||||| || || | ||||||| || |||||||| |||||||| || || || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 170049 TTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCT 170092 | |||||||| ||||| || || || | ||||||||||| ||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq11 Length=27185770 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 170265 TCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTC 170324 ||||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||| Sbjct 25910912 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 25910853 Query 170325 TCGACCTCGCTGCT 170338 | ||||| |||||| Sbjct 25910852 TAGACCTAGCTGCT 25910839 >seq5 Length=38039368 Score = 100 bits (110), Expect = 3e-16 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 170153 TGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAAC 170212 |||||||| ||| | ||| | || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 170213 CAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGT 170272 || || | | ||| | || ||||| || | | || ||||| || | |||||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 170273 GCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAAC 170317 || ||||| |||||||| |||||||| |||||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592198311170240