Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq6 152 1e-31
seq1127 107 4e-18
seq5 107 4e-18
seq1 107 4e-18
seq9 105 1e-17
seq73 104 5e-17
seq12 104 5e-17
seq11 104 5e-17
seq10 104 5e-17
seq3 104 5e-17
seq2 104 5e-17
seq8 98.7 2e-15
>seq6
Length=30401905
Score = 152 bits (168), Expect = 1e-31
Identities = 310/455 (68%), Gaps = 8/455 (2%)
Strand=Plus/Plus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
|| |||||||| |||||||||| | || || || || || | || || || |||
Sbjct 11442690 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 11442749
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
||||||||||| ||||| ||| || | ||||| |||||| | || ||||||
Sbjct 11442750 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 11442809
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352
||||| ||||||||||| || || | |||| | || | || |||
Sbjct 11442810 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 11442869
Query 230353 CAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409
| |||||| | | |||| || ||| | ||| | | || || || || | |
Sbjct 11442870 CGCGGCAAGCT-CGA--CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 11442926
Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468
|| | ||||||| | || ||||| | || ||||| || | |||||||||| || ||
Sbjct 11442927 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGACCT 11442985
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| | ||||||||||| ||||| ||||||||| | | | || || || | | ||||
Sbjct 11442986 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAA 11443045
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|||||||| |||||||| | | ||||||||||| || || || || |||||
Sbjct 11443046 GATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 11443105
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623
|||||||||||| ||||| ||| | ||||| ||||
Sbjct 11443106 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 11443140
Score = 147 bits (162), Expect = 5e-30
Identities = 310/455 (68%), Gaps = 8/455 (2%)
Strand=Plus/Minus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
|| |||||||| |||||||||| | || || || || || | || || || |||
Sbjct 1929833 TTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 1929774
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
||||||||||| ||||| ||| || | ||||| |||||| | || ||||||
Sbjct 1929773 TGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAG 1929714
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352
||||| ||||||||||| ||||| | |||| | || | || |||
Sbjct 1929713 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 1929654
Query 230353 CAGAACAAGCTACCATTCGAG--ACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409
| |||||| | | |||| ||| ||| | | ||| | | || || || || | |
Sbjct 1929653 CGCGGCAAGCT-CGA--CGAGGCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATC 1929597
Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468
|| | ||||||| | || ||||| | || ||||| || | || ||||||| || ||
Sbjct 1929596 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGGATGAACGGCGAGCT 1929538
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| | ||||||||||| ||||| |||||||| | | | || || || | | ||||
Sbjct 1929537 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAA 1929478
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|||||||| ||||| || | | ||||||||||| || || || || |||||
Sbjct 1929477 GATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 1929418
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623
|||||||||||| ||||| ||| | ||||| ||||
Sbjct 1929417 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 1929383
>seq1127
Length=558
Score = 107 bits (118), Expect = 4e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||||||||||||||||||||||||| || || |||| || ||||||||||||||||
Sbjct 310 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 251
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 250 GCCCCACGGTGGGC 237
>seq5
Length=25164199
Score = 107 bits (118), Expect = 4e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||||||||||||||||||||||||| || || |||| || ||||||||||||||||
Sbjct 18545966 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 18545907
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 18545906 GCCCCACGGTGGGC 18545893
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||||||||||||||||||||||||| || || |||| || |||||||||||||||||
Sbjct 16935549 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16935608
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 16935609 CCCCACGGTGGGC 16935621
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 7893112 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7893053
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 7893052 CCCACGGTGGGC 7893041
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 22122195 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22122254
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 22122255 CCCACGGTGGGC 22122266
>seq1
Length=43445878
Score = 107 bits (118), Expect = 4e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||||||||||||||||||||||||| || || |||| || ||||||||||||||||
Sbjct 38921337 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 38921278
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 38921277 GCCCCACGGTGGGC 38921264
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 10893882 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10893941
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 10893942 CCCACGGTGGGC 10893953
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 26600997 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26600938
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 26600937 CCCACGGTGGGC 26600926
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 27457645 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27457586
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 27457585 CCCACGGTGGGC 27457574
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || |||||||||||||||||
Sbjct 33974316 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGG 33974257
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 33974256 CCCACGGTGGGC 33974245
>seq9
Length=22605696
Score = 105 bits (116), Expect = 1e-17
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765
||| ||||||||||||||||||||||||||| || || |||| || ||||||||||||||
Sbjct 8378421 GCTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 8378480
Query 165766 GAGCCCCACGATGGGC 165781
|||||||||| |||||
Sbjct 8378481 GAGCCCCACGGTGGGC 8378496
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 3105765 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3105824
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3105825 CCCACGGTGGGC 3105836
>seq73
Length=17659
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 16191 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16132
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 16131 CCCACGGTGGGC 16120
>seq12
Length=18681871
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 15819776 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15819835
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 15819836 CCCACGGTGGGC 15819847
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 16304253 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16304194
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 16304193 CCCACGGTGGGC 16304182
>seq11
Length=21200727
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 21057913 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21057854
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 21057853 CCCACGGTGGGC 21057842
>seq10
Length=17164355
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 13499076 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13499017
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 13499016 CCCACGGTGGGC 13499005
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 14956582 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14956523
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 14956522 CCCACGGTGGGC 14956511
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 14956181 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14956122
Query 165770 CCCACGATGGGC 165781
|||| | |||||
Sbjct 14956121 CCCATGGTGGGC 14956110
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || |||||| |||||||||||
Sbjct 14956414 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 14956355
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 14956354 CCCACGGTGGGC 14956343
>seq3
Length=46202548
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 24182746 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24182805
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 24182806 CCCACGGTGGGC 24182817
>seq2
Length=36083738
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 17505630 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17505689
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 17505690 CCCACGGTGGGC 17505701
Score = 104 bits (114), Expect = 5e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
|| ||||||||||||||||||||||||||| || || |||| || |||||||||||||||
Sbjct 17509963 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 17510022
Query 165767 AGCCCCACGATGGGC 165781
||||||||| |||||
Sbjct 17510023 AGCCCCACGGTGGGC 17510037
>seq8
Length=23026653
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 3877358 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3877417
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3877418 CCCACGGTGGGC 3877429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057692694951440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |