Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 113 5e-20 >seq5 Length=25164199 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 ||| || ||||| || | ||| || ||||| || |||||||| | ||| | |||| Sbjct 3366443 AGTGCCAGCATTGAAAAGGGTCGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAGATG 3366502 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| |||| |||||| || || || || | ||| || || || |||| || | ||||| Sbjct 3366503 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 3366561 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||||||||| || |||||||| | ||| | | |||||| | ||| ||| | |||| Sbjct 3366562 ACATGTGCTGTGGCCTTTCAACAACCTTCCCGCCAAGTTTCAGGAGGTAAGATCTCTCCA 3366621 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || ||||||||||||| || ||||| | || ||||| || Sbjct 3366622 GAGTCTTGAAACCAAAATAGTCATAATCGAAGTCCCTATCATAAATTAT 3366670 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 3366124 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 3366183 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||| | ||||| || || ||||||||| ||| | || |||||||| || ||| Sbjct 3366184 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 3366243 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || ||| || || || || ||| || | || ||| || || ||||||||||| Sbjct 3366244 TACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 3366303 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||||| || || ||||| ||||| Sbjct 3366304 TCCCTCAATGCTGTCATCTTTCATG 3366328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593649700314240