Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 3e-14 seq12 82.4 6e-11 >seq11 Length=21200727 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || ||||||||||| || |||||||||||||| |||||||| ||||| |||||| Sbjct 12983403 TCATGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCA 12983344 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553 ||| | || || || || |||||||| |||||| Sbjct 12983343 TCATATTCTCTTCTGACATACATGATTGCTCATGTT 12983308 >seq12 Length=18681871 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489 ||| ||||| |||| || || || || || || ||||| ||||| || |||||||| Sbjct 10864922 CCAGTTTTATGTTGAGGATGGGGAGTTATCATGCCAGATGTACCAACGCTCTGCTGATAT 10864981 Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || ||||| || ||||| |||||| ||| | || || || | |||||||||||| Sbjct 10864982 GGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACA 10865041 Query 20550 TGT 20552 || Sbjct 10865042 AGT 10865044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399136867347160