Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq11 93.3 3e-14
seq12 82.4 6e-11
>seq11
Length=21200727
Score = 93.3 bits (102), Expect = 3e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517
|| || || ||||||||||| || |||||||||||||| |||||||| ||||| ||||||
Sbjct 12983403 TCATGCCAGATGTATCAACGCTCTGCTGATATGGGACTTGGTGTTCCATTCAACATTGCA 12983344
Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTT 20553
||| | || || || || |||||||| ||||||
Sbjct 12983343 TCATATTCTCTTCTGACATACATGATTGCTCATGTT 12983308
>seq12
Length=18681871
Score = 82.4 bits (90), Expect = 6e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 20430 CCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATAT 20489
||| ||||| |||| || || || || || || ||||| ||||| || ||||||||
Sbjct 10864922 CCAGTTTTATGTTGAGGATGGGGAGTTATCATGCCAGATGTACCAACGCTCTGCTGATAT 10864981
Query 20490 GGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549
||| || ||||| || ||||| |||||| ||| | || || || | ||||||||||||
Sbjct 10864982 GGGGCTCGGTGTGCCATTCAACATTGCATCATATTCTCTTCTGACATGTATGATTGCACA 10865041
Query 20550 TGT 20552
||
Sbjct 10865042 AGT 10865044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399136867347160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |