Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 2e-21
seq5 98.7 2e-15
seq2 95.1 3e-14
>seq6
Length=30401905
Score = 118 bits (130), Expect = 2e-21
Identities = 304/452 (67%), Gaps = 12/452 (3%)
Strand=Plus/Plus
Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317
||| ||| | || | ||||| || ||||||||||| ||||| || || || | |||||
Sbjct 1929387 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1929446
Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377
||| ||||| ||||||||| |||||||| ||| | | |||| ||| | |||
Sbjct 1929447 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCG 1929506
Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437
||| || || |||| |||||||| ||||| || || | || |||| |||||||||
Sbjct 1929507 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1929566
Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496
||| |||| || || | | ||| || | ||| | | || |||| || || || |
Sbjct 1929567 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1929625
Query 157497 GAACTCTCTCCCGCGGC-AGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555
| || | | || || | ||| | ||| | | ||||| ||| | | | ||
Sbjct 1929626 GGACGC-GTGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 1929683
Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGAA 157611
|| ||| || || ||||| | || |||||| ||| | ||| | | || | |||
Sbjct 1929684 GCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA- 1929742
Query 157612 CTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTC 157671
|| | |||||||| |||||| ||||||||||||| || || ||| | |||||
Sbjct 1929743 -GTCCG-CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTC 1929800
Query 157672 CAGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703
| |||| |||| |||| |||| ||| ||||
Sbjct 1929801 GACGCAGGCGAAGGCGACGAGCCGCTCGGCGA 1929832
Score = 104 bits (114), Expect = 5e-17
Identities = 297/449 (66%), Gaps = 6/449 (1%)
Strand=Plus/Minus
Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317
||| ||| | || | ||||| || ||||||||||| ||||| || || || | |||||
Sbjct 11443136 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 11443077
Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377
||| ||||| ||||||||| |||||||| ||| | | | || ||| | || |
Sbjct 11443076 CCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCG 11443017
Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437
||| || || |||| |||||||| ||||| | || | || |||| |||||||||
Sbjct 11443016 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 11442957
Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496
||| |||| || || | | ||| || | ||| | | || |||| || || ||
Sbjct 11442956 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 11442898
Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555
| || | | || || | ||| | ||| | | ||||| ||| | | | ||
Sbjct 11442897 GGACGCGCGCCTCGTCG-AGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 11442840
Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614
|| ||| || || ||||| | || |||||| ||| | ||| | | ||| |
Sbjct 11442839 GCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAG 11442780
Query 157615 CTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCAG 157674
| ||||||||| |||||| ||||||||||||| || || ||| | ||||| |
Sbjct 11442779 CCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGAC 11442720
Query 157675 ACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703
|||| |||| |||| || | ||| ||||
Sbjct 11442719 GCAGGCGAAGGCGACGAGGCGCTCGGCGA 11442691
>seq5
Length=25164199
Score = 98.7 bits (108), Expect = 2e-15
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
|| || || || || | |||| |||||| || ||||||| ||| || ||||| ||| ||
Sbjct 3366655 GACTTCGATTATGACTATTTTGGTTTCAAGACTCTGGAGAGATCTTACCTCCTGAAACTT 3366596
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
| || ||| | || ||| | ||||||||||| ||| |||| | || || || |||
Sbjct 3366595 GGCGGGAAGGTTGTTGAAAGGCCACAGCACATGTTAATGAGAGTTTCAGTGGGTATACAC 3366536
Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987
||||||||||| ||| | || |||| || || | | ||| | | |||||| | ||
Sbjct 3366535 AAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTG-ATGTCTCAGCGCTGGTTTAC 3366477
Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020
||||| | ||||| || ||||| || || ||
Sbjct 3366476 TCATGCTTCGCCGACCCTTTTCAATGCTGGCAC 3366444
>seq2
Length=36083738
Score = 95.1 bits (104), Expect = 3e-14
Identities = 154/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864
|| |||||| || || || | ||||| ||| || || || |||| ||| ||||| | ||
Sbjct 34746190 CAGAGATTTTGACTATGACTACTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 34746131
Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924
| ||| ||| ||| | |||||| || ||||| ||| | ||| |||| || | |||||
Sbjct 34746130 AGTTGGTGGAAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGAT 34746071
Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982
||||||||||| || || | | ||| || | |||||| | ||| | | ||||||
Sbjct 34746070 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACGTACCACATGATGTCTCAGCGCTGG 34746013
Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020
| || ||||| | || || || ||||| || || ||
Sbjct 34746012 TTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCAC 34745975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073633116061184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |