Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 118 2e-21 seq5 98.7 2e-15 seq2 95.1 3e-14 >seq6 Length=30401905 Score = 118 bits (130), Expect = 2e-21 Identities = 304/452 (67%), Gaps = 12/452 (3%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 1929387 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1929446 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | |||| ||| | ||| Sbjct 1929447 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCG 1929506 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| || || | || |||| ||||||||| Sbjct 1929507 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1929566 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| || | ||| | | || |||| || || || | Sbjct 1929567 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1929625 Query 157497 GAACTCTCTCCCGCGGC-AGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | | || || | ||| | ||| | | ||||| ||| | | | || Sbjct 1929626 GGACGC-GTGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 1929683 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGAA 157611 || ||| || || ||||| | || |||||| ||| | ||| | | || | ||| Sbjct 1929684 GCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA- 1929742 Query 157612 CTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTC 157671 || | |||||||| |||||| ||||||||||||| || || ||| | ||||| Sbjct 1929743 -GTCCG-CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTC 1929800 Query 157672 CAGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| |||| ||| |||| Sbjct 1929801 GACGCAGGCGAAGGCGACGAGCCGCTCGGCGA 1929832 Score = 104 bits (114), Expect = 5e-17 Identities = 297/449 (66%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 11443136 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 11443077 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | | || ||| | || | Sbjct 11443076 CCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCG 11443017 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 11443016 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 11442957 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| || | ||| | | || |||| || || || Sbjct 11442956 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 11442898 Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | | || || | ||| | ||| | | ||||| ||| | | | || Sbjct 11442897 GGACGCGCGCCTCGTCG-AGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 11442840 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || ||| || || ||||| | || |||||| ||| | ||| | | ||| | Sbjct 11442839 GCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAG 11442780 Query 157615 CTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCAG 157674 | ||||||||| |||||| ||||||||||||| || || ||| | ||||| | Sbjct 11442779 CCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGAC 11442720 Query 157675 ACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 |||| |||| |||| || | ||| |||| Sbjct 11442719 GCAGGCGAAGGCGACGAGGCGCTCGGCGA 11442691 >seq5 Length=25164199 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || || | |||| |||||| || ||||||| ||| || ||||| ||| || Sbjct 3366655 GACTTCGATTATGACTATTTTGGTTTCAAGACTCTGGAGAGATCTTACCTCCTGAAACTT 3366596 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | ||||||||||| ||| |||| | || || || ||| Sbjct 3366595 GGCGGGAAGGTTGTTGAAAGGCCACAGCACATGTTAATGAGAGTTTCAGTGGGTATACAC 3366536 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||||| ||| | || |||| || || | | ||| | | |||||| | || Sbjct 3366535 AAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTG-ATGTCTCAGCGCTGGTTTAC 3366477 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | ||||| || ||||| || || || Sbjct 3366476 TCATGCTTCGCCGACCCTTTTCAATGCTGGCAC 3366444 >seq2 Length=36083738 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || || | ||||| ||| || || || |||| ||| ||||| | || Sbjct 34746190 CAGAGATTTTGACTATGACTACTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 34746131 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| || ||||| ||| | ||| |||| || | ||||| Sbjct 34746130 AGTTGGTGGAAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGAT 34746071 Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982 ||||||||||| || || | | ||| || | |||||| | ||| | | |||||| Sbjct 34746070 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACGTACCACATGATGTCTCAGCGCTGG 34746013 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | || ||||| | || || || ||||| || || || Sbjct 34746012 TTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCAC 34745975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073633116061184