Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 4e-26
seq5 120 2e-22
seq8 114 1e-20
seq2 107 2e-18
seq9 105 5e-18
seq6 102 6e-17
>seq1
Length=43445878
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| |||||||||||| || ||| |||| |||
Sbjct 9972235 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCC 9972176
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | |||||| |||||||| || | ||||||||||||
Sbjct 9972175 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGG 9972116
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| ||||||||||| || ||||||||
Sbjct 9972115 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTC 9972056
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|||||||| |||||||| ||||| ||||| |||
Sbjct 9972055 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 9972023
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| |||||||||||| || ||| |||| |||
Sbjct 9981443 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCC 9981384
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | |||||| |||||||| || | ||||||||||||
Sbjct 9981383 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGG 9981324
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| ||||||||||| || ||||||||
Sbjct 9981323 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTC 9981264
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|||||||| |||||||| ||||| ||||| |||
Sbjct 9981263 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 9981231
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||||||| ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 21648094 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCC 21648153
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | |||||| ||||| || || | ||||||||||||
Sbjct 21648154 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGC 21648213
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
| || ||| || | | |||| | | ||||||||||| || || |||||
Sbjct 21648214 ACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTC 21648273
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||||||| |||||||| ||||| |||||
Sbjct 21648274 CCCGTCAGGGTCTTCACGAAGATCTGCAT 21648302
Score = 87.8 bits (96), Expect = 1e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||||||||| ||||||||| |||||||||||| ||| ||| |||| ||||| ||
Sbjct 21638782 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTG 21638841
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243
|| |||||||| || | |||||| |||| || || || |||||| ||||
Sbjct 21638842 CTTGCCGGCGAAGATGAGCCGCTGCTGGTGCGGCGGGACGCCCTCCCTGTC 21638892
>seq5
Length=25164199
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| |||||||||||||||||||||| || ||| | || |||
Sbjct 21087471 ACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCTTCC 21087530
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| |||| ||||| ||||| || || | ||| ||||| |||
Sbjct 21087531 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGG 21087590
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||||| ||||| ||||||
Sbjct 21087591 ATCTTAGCCTTCACATTGTCGATGGTGTCGGAGCTCTCAACCTCCAGAGTAATGGTCTTG 21087650
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || |||||||| |||||||| |||||
Sbjct 21087651 CCAGTGAGAGTCTTGACAAAGATCTGCAT 21087679
Score = 109 bits (120), Expect = 4e-19
Identities = 149/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| |||||||||||| || ||| |||| || || ||
Sbjct 3097286 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 3097345
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| |||||||| || | ||||| ||||| || || | || ||||||||| || ||
Sbjct 3097346 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTT 3097405
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| ||||||||||| || || ||||| |||||
Sbjct 3097406 GGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGT 3097465
Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340
||| |||||||| ||||| ||||| |||
Sbjct 3097466 CAGGGTCTTCACGAAGATCTGCATCTTG 3097493
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || | | | || || || ||
Sbjct 21088160 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCCTCGAGCTG 21088219
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || |||| ||||| ||||| || || | |||||||||||| || ||
Sbjct 21088220 CTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTT 21088279
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
| |||||| | | | | || | ||| ||||| | ||| || |||||||| ||
Sbjct 21088280 TGCCTTAACGTTGTCAATGGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGT 21088339
Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337
|| ||||| |||||||||||||||
Sbjct 21088340 CAAGGTCTTGACAAAGATTTGCATG 21088364
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||||||||||||||| || ||| | || |||
Sbjct 21087699 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCC 21087758
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | | ||| ||||| || || | |||||||| |||
Sbjct 21087759 AGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGG 21087818
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | ||||| | ||| ||||| | |||||| ||||||
Sbjct 21087819 ATCTTCGCCTTCACGTTATCAATGGTGTCCGAGCTCTCAACCTCAAGGGTAATAGTCTTG 21087878
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || ||||| ||||| || |||||
Sbjct 21087879 CCAGTGAGTGTCTTGACAAAAATCTGCAT 21087907
>seq8
Length=23026653
Score = 114 bits (126), Expect = 1e-20
Identities = 151/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||||||||||||||| || |||| | || || |
Sbjct 4139833 CAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCTTCCTCGA 4139892
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || |||||||| || | ||||| ||||| ||||| | |||||||||||| |
Sbjct 4139893 GCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGA 4139952
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | ||||| ||||||||| | ||| || | |||||
Sbjct 4139953 TCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGACTTGC 4140012
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| ||||| |||||||||||||| |||||
Sbjct 4140013 CGGTCAGGGTCTTCACAAAGATCTGCAT 4140040
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/210 (71%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||||||||||||||| || ||| | || || |
Sbjct 4124569 CAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGA 4124628
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGT--TGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
| || || |||||||| || | |||| | ||||| || | | ||||||||||||
Sbjct 4124629 GCTGCTTGCCGGCGAAGATGAGGCGCTCTGCTGGTCTGGGGAAATGCCCTCCTTGTCCTG 4124688
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|| ||| ||| || | | | |||| ||||||||| | ||| || | |||
Sbjct 4124689 GATCTTTGCCTTCACATTGTCGATGGTGTCTGATGACTCCACCTCAAGGGTGATGGACTT 4124748
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| |||||||||||||||||||| |||||
Sbjct 4124749 GCCGGTCAGAGTCTTCACAAAGATCTGCAT 4124778
>seq2
Length=36083738
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| |||||||||||| ||| ||| | || |||
Sbjct 2262220 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCC 2262279
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 2262280 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 2262339
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||||| || || |||||
Sbjct 2262340 ATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTCTTC 2262399
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||| ||||| |||||
Sbjct 2262400 CCAGTCAAGGTCTTCACGAAGATCTGCAT 2262428
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/209 (70%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| |||||||||||| || | | || ||||
Sbjct 2262766 CAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCATCCTCCA 2262825
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || || || || || | ||||| ||||| || || | |||||||||||| |
Sbjct 2262826 GCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGA 2262885
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | |||| | ||||||||| | ||| || |||||||
Sbjct 2262886 TCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGC 2262945
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337
| ||||||||||| || ||||| ||||||
Sbjct 2262946 CGGTCAGAGTCTTGACGAAGATCTGCATG 2262974
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || | | || ||||| ||
Sbjct 2262453 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTG 2262512
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || || | ||||| ||||| || || | |||||||||||| || ||
Sbjct 2262513 CTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 2262572
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| | ||| ||||||| ||| || |||||||| ||
Sbjct 2262573 GGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTGCCTGT 2262632
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| |||||
Sbjct 2262633 GAGGGTCTTGACAAAGATCTGCAT 2262656
>seq9
Length=22605696
Score = 105 bits (116), Expect = 5e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| || | || | |||| ||| || || ||||||||||||||||||||||
Sbjct 12264475 GCCACCCCTTAGCCTGAGGACCAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGC 12264416
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|||| ||| | || ||||| || || |||||||||||||| |||||||| || |||||
Sbjct 12264415 CAGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATCTGGAGG 12264356
Query 45229 CACACCCTCCTTGTCC 45244
| || |||||||||
Sbjct 12264355 GATCCCTTCCTTGTCC 12264340
>seq6
Length=30401905
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| |||||||||||| ||| ||| | || || || ||
Sbjct 27218338 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTG 27218279
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| || | ||||| ||||| || || | |||||||||||| || ||
Sbjct 27218278 CTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 27218219
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| ||| ||||| | ||| || |||||||| ||
Sbjct 27218218 GGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 27218159
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||| |||||
Sbjct 27218158 GAGGGTCTTCACAAAGATCTGCAT 27218135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395028552483448
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