Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2 91.5 1e-13
seq4 87.8 2e-12
>seq2
Length=36083738
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| ||| | |||| || ||||| || || ||||| || ||| | || ||
Sbjct 2262759 CGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCA 2262818
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| || |||||| |||| || || ||||| || || || ||||| || |||
Sbjct 2262819 TCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 2262878
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||| | | ||||||||||| ||| |
Sbjct 2262879 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 2262938
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||||||||||| || || ||||| || |||||
Sbjct 2262939 GTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2262973
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| || |||||| |||| ||||| ||||| || || || ||||| || |||
Sbjct 2263047 TCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2263106
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||| | || ||||||||| | ||| |
Sbjct 2263107 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 2263166
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||||||||| || || || || || |||||
Sbjct 2263167 GTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 2263201
>seq4
Length=32292456
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || |||||||| || | |||| ||| || ||||| || |||
Sbjct 28750185 GTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 28750126
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||| || || ||||| || ||||| ||||| || || || ||| || ||
Sbjct 28750125 GCGAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 28750066
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||||| || ||| ||||| | ||| | ||||||||||| | ||
Sbjct 28750065 ACATTGTCGATTGTGTCGGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 28750006
Query 139748 TTTACGAATATTTGCATAGCT 139768
|| ||||| || |||||| ||
Sbjct 28750005 TTCACGAAGATCTGCATACCT 28749985
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || |||||||| || | |||| ||| || ||||| || |||
Sbjct 28750413 GTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 28750354
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||| || || ||||| || ||||| ||||| || || || ||| || ||
Sbjct 28750353 GCGAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 28750294
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||||| || ||| ||||| | ||| | ||||||||||| | ||
Sbjct 28750293 ACATTGTCGATTGTGTCGGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 28750234
Query 139748 TTTACGAATATTTGCATAGCT 139768
|| ||||| || |||||| ||
Sbjct 28750233 TTCACGAAGATCTGCATACCT 28750213
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | |||| || | ||| | || || || ||||| ||||| || ||
Sbjct 28749759 CCGCCCCGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 28749700
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || |||||||| || |||||| |||| ||||| ||||| || || ||
Sbjct 28749699 AGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 28749640
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | ||||| | | ||| |||
Sbjct 28749639 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATCGTGTCAGACGACTCGACC 28749580
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||||||||| | || || ||||||||||||||
Sbjct 28749579 TCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 28749533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496003926649600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |