Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq4 87.8 2e-12 >seq2 Length=36083738 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| ||| | |||| || ||||| || || ||||| || ||| | || || Sbjct 2262759 CGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTGCCA 2262818 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||| || || ||||| || || || ||||| || ||| Sbjct 2262819 TCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 2262878 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | | ||||||||||| ||| | Sbjct 2262879 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 2262938 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 2262939 GTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2262973 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||| ||||| ||||| || || || ||||| || ||| Sbjct 2263047 TCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTG 2263106 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | || ||||||||| | ||| | Sbjct 2263107 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 2263166 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||||||||| || || || || || ||||| Sbjct 2263167 GTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 2263201 >seq4 Length=32292456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| || | |||| ||| || ||||| || ||| Sbjct 28750185 GTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 28750126 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || ||||| ||||| || || || ||| || || Sbjct 28750125 GCGAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 28750066 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| || ||| ||||| | ||| | ||||||||||| | || Sbjct 28750065 ACATTGTCGATTGTGTCGGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 28750006 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 28750005 TTCACGAAGATCTGCATACCT 28749985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| || | |||| ||| || ||||| || ||| Sbjct 28750413 GTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 28750354 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || ||||| ||||| || || || ||| || || Sbjct 28750353 GCGAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 28750294 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| || ||| ||||| | ||| | ||||||||||| | || Sbjct 28750293 ACATTGTCGATTGTGTCGGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 28750234 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 28750233 TTCACGAAGATCTGCATACCT 28750213 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | |||| || | ||| | || || || ||||| ||||| || || Sbjct 28749759 CCGCCCCGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 28749700 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || |||||| |||| ||||| ||||| || || || Sbjct 28749699 AGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 28749640 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 28749639 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATCGTGTCAGACGACTCGACC 28749580 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | || || |||||||||||||| Sbjct 28749579 TCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 28749533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496003926649600