Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 174 2e-38 >seq6 Length=30401905 Score = 174 bits (192), Expect = 2e-38 Identities = 582/889 (65%), Gaps = 40/889 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||||||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 1930249 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 1930190 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTT--GA 125112 |||||| || ||||| || || ||| ||| | | | ||||| | | || | | Sbjct 1930189 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGC 1930130 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || ||||| | || | || ||| | | |||||||| || | ||||||||| | Sbjct 1930129 CCGAC---GAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCA 1930073 Query 125173 TCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG 125231 |||| ||| || || | | ||| | || || || | | |||| | || Sbjct 1930072 TCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCG-CG 1930015 Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 || || ||||| ||||| ||| || |||||| | |||||||| |||||||| || Sbjct 1930014 CGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCT 1929955 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCG 125346 | | || | |||||| ||||| | |||| || || ||||| ||| |||| Sbjct 1929954 GCTCGAGACGTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCG 1929899 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 |||| || || | | || ||||| | |||| || || |||||||| | || | Sbjct 1929898 ACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCG 1929839 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| ||||| |||||||| ||| Sbjct 1929838 AGCGCTTCG----CCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCG 1929783 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | || |||| ||||||| |||||||||||||||||||||||||| || || || Sbjct 1929782 GGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTT 1929724 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || Sbjct 1929723 CTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCT--- 1929667 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 | || | || | ||| | || || | ||| | | ||| | || || | Sbjct 1929666 ---CTACGACCTCC--TCCGCGGCAAGCTCGA-CGAGGCACGCGTCCAGGAGATCGTCGC 1929613 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||| |||||| || || ||||| | ||| | || || ||| | | || Sbjct 1929612 CGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGG 1929553 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 |||||| || |||| ||| || ||||||| ||||| || || || || || || | Sbjct 1929552 GATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCT---CAT 1929496 Query 125765 GTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821 | | | || || ||||| ||||||| | || || || || | ||| ||| Sbjct 1929495 GGCGCTCGGGTGCAAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCAT 1929436 Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || |||| ||||||||||| ||||||||| ||| |||| ||| Sbjct 1929435 CTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 1929387 Score = 167 bits (184), Expect = 3e-36 Identities = 429/643 (67%), Gaps = 24/643 (4%) Strand=Plus/Plus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| ||| | Sbjct 11442512 CTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGCT 11442571 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGG 125352 || | ||||| ||||| | || || || ||| ||| || ||| |||||||| | Sbjct 11442572 CGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACAGGCTGTTCCGCGCCATCGACACCG 11442630 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CT 125411 | ||| | | || ||||| | |||| || || |||||||| | || | || || Sbjct 11442631 TCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCT 11442690 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 ||| |||| | || || || |||||| ||| ||||| |||||||| ||||| | Sbjct 11442691 TCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCC 11442746 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 || |||| ||||||| |||||||||||||| || |||||||| || || || | || Sbjct 11442747 TTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAA 11442805 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590 |||| | || || || ||||||||||| ||||| ||||| ||| || || | | Sbjct 11442806 CGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCT------CTA 11442859 Query 125591 CTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 | | || | ||| | || || | ||| | ||| | | || || |||| || Sbjct 11442860 CGACCTCC--TCCGCGGCAAGCTCGA-CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGC 11442916 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 ||| || || ||||| | ||| | || || ||| | | |||||||| Sbjct 11442917 CGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAA 11442976 Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGAT 125770 | || | || ||| || ||||||| ||||| || || || || || || | | | | Sbjct 11442977 CGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCT---CATGGCGCT 11443033 Query 125771 TGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACT 125827 ||| || ||||| ||||||| | || ||||| || | ||| ||| || || Sbjct 11443034 CGGCTGCAAGAAGATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCT 11443093 Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||| ||||||||||| ||||||||| ||| |||| ||| Sbjct 11443094 GCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 11443136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740969457730880