Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq6 174 2e-38
>seq6
Length=30401905
Score = 174 bits (192), Expect = 2e-38
Identities = 582/889 (65%), Gaps = 40/889 (4%)
Strand=Plus/Minus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
|||| || |||||||| | | || ||||| | ||||| ||||| ||| || || |
Sbjct 1930249 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 1930190
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTT--GA 125112
|||||| || ||||| || || ||| ||| | | | ||||| | | || | |
Sbjct 1930189 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGC 1930130
Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172
| || ||||| | || | || ||| | | |||||||| || | ||||||||| |
Sbjct 1930129 CCGAC---GAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCA 1930073
Query 125173 TCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG 125231
|||| ||| || || | | ||| | || || || | | |||| | ||
Sbjct 1930072 TCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCG-CG 1930015
Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290
|| || ||||| ||||| ||| || |||||| | |||||||| |||||||| ||
Sbjct 1930014 CGCCTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCT 1929955
Query 125291 GATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCG 125346
| | || | |||||| ||||| | |||| || || ||||| ||| ||||
Sbjct 1929954 GCTCGAGACGTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCG 1929899
Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406
|||| || || | | || ||||| | |||| || || |||||||| | || |
Sbjct 1929898 ACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCG 1929839
Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465
|| ||||| |||| | || || || |||||| ||| ||||| |||||||| |||
Sbjct 1929838 AGCGCTTCG----CCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCG 1929783
Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524
|| | || |||| ||||||| |||||||||||||||||||||||||| || || ||
Sbjct 1929782 GGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTT 1929724
Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584
| |||||| | || || || ||||||||||| ||||| ||||| ||| || ||
Sbjct 1929723 CTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCT--- 1929667
Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644
| || | || | ||| | || || | ||| | | ||| | || || |
Sbjct 1929666 ---CTACGACCTCC--TCCGCGGCAAGCTCGA-CGAGGCACGCGTCCAGGAGATCGTCGC 1929613
Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704
||| |||||| || || ||||| | ||| | || || ||| | | ||
Sbjct 1929612 CGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGG 1929553
Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764
|||||| || |||| ||| || ||||||| ||||| || || || || || || |
Sbjct 1929552 GATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCT---CAT 1929496
Query 125765 GTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821
| | | || || ||||| ||||||| | || || || || | ||| |||
Sbjct 1929495 GGCGCTCGGGTGCAAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCAT 1929436
Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
|| || |||| ||||||||||| ||||||||| ||| |||| |||
Sbjct 1929435 CTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 1929387
Score = 167 bits (184), Expect = 3e-36
Identities = 429/643 (67%), Gaps = 24/643 (4%)
Strand=Plus/Plus
Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293
||| ||||| ||||| ||| || |||||| | ||||| || |||||||| ||| |
Sbjct 11442512 CTTCTACGGGTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGCT 11442571
Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGG 125352
|| | ||||| ||||| | || || || ||| ||| || ||| |||||||| |
Sbjct 11442572 CGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACAGGCTGTTCCGCGCCATCGACACCG 11442630
Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CT 125411
| ||| | | || ||||| | |||| || || |||||||| | || | || ||
Sbjct 11442631 TCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCT 11442690
Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470
||| |||| | || || || |||||| ||| ||||| |||||||| ||||| |
Sbjct 11442691 TCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCC 11442746
Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530
|| |||| ||||||| |||||||||||||| || |||||||| || || || | ||
Sbjct 11442747 TTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAA 11442805
Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590
|||| | || || || ||||||||||| ||||| ||||| ||| || || | |
Sbjct 11442806 CGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCT------CTA 11442859
Query 125591 CTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650
| | || | ||| | || || | ||| | ||| | | || || |||| ||
Sbjct 11442860 CGACCTCC--TCCGCGGCAAGCTCGA-CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGC 11442916
Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710
||| || || ||||| | ||| | || || ||| | | ||||||||
Sbjct 11442917 CGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAA 11442976
Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGAT 125770
| || | || ||| || ||||||| ||||| || || || || || || | | | |
Sbjct 11442977 CGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCT---CATGGCGCT 11443033
Query 125771 TGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACT 125827
||| || ||||| ||||||| | || ||||| || | ||| ||| || ||
Sbjct 11443034 CGGCTGCAAGAAGATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCT 11443093
Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
|||| ||||||||||| ||||||||| ||| |||| |||
Sbjct 11443094 GCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 11443136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740969457730880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |