Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 3e-27
seq6 122 2e-22
seq4 116 9e-21
>seq5
Length=25164199
Score = 138 bits (152), Expect = 3e-27
Identities = 155/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|||| ||||| || |||||||| || ||||||| || || | || || || || ||
Sbjct 21087705 TGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGC 21087764
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| |||||||| || || ||||| || || || || || || || |||||||| |||||
Sbjct 21087765 TTGCCAGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTC 21087824
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || || || | ||| || | || | || ||||| || ||||||||||| |||||
Sbjct 21087825 GCCTTCACGTTATCAATGGTGTC-CGAGCTCTCAACCTCAAGGGTAATAGTCTTGCCAGT 21087883
Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560
||||| || ||||| |||||||||
Sbjct 21087884 GAGTGTCTTGACAAAAATCTGCATT 21087908
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || ||||| | || || ||||| | || || || ||||| || || |||||
Sbjct 21087906 ATTCCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 21087965
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || ||||| ||||| || || || || ||||||||||| || | ||| || || ||
Sbjct 21087966 GCGAGGGTTCTGCCGTCCTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCTGGG 21088025
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||| ||||| || || || || || | || || | ||
Sbjct 21088026 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGATGACTCG 21088085
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || ||||| ||||| |||||||| || || || || |||||||||
Sbjct 21088086 ACCTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCATT 21088136
>seq6
Length=30401905
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || |||||||| || || || | || || ||||||||||| || || |||
Sbjct 26902858 ATGCCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCA 26902799
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || || | |||||| || || || || || ||||| || || | ||| || ||||||
Sbjct 26902798 GCCAGGGTCCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGA 26902739
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||| ||||| || || ||||| || | || || | ||
Sbjct 26902738 GGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACTCG 26902679
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| || || | || || ||||| ||||||||
Sbjct 26902678 ACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 26902629
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| || || ||||| || || | ||| | || || ||||||||||| || || ||||
Sbjct 25234387 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAG 25234328
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
|| || | || ||||| ||||| || || || ||||| ||||| || || || || |
Sbjct 25234327 CTAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGG 25234268
Query 104451 GTATTCCTTCTTTATCCTGAA 104471
| || || ||||| |||||||
Sbjct 25234267 GAATACCCTCTTTGTCCTGAA 25234247
>seq4
Length=32292456
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || || || || || || || ||||| || ||||| || | ||||| | || ||
Sbjct 28749516 AGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCC 28749457
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || ||||| || || || | ||| || || ||||| || || || ||||||
Sbjct 28749456 TCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 28749397
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| || || ||||| || | |||||| | || ||||| | || || |||
Sbjct 28749396 TGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTC 28749337
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || || |||||||||||
Sbjct 28749336 TTGCCAGTGAGGGTCTTAACGAATATCTGCAT 28749305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151255479795104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |