Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 >seq3 Length=46202548 Score = 127 bits (140), Expect = 2e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || | || || | || |||| ||| | ||||||| Sbjct 8091100 ACGCCGGTGGATCCGAACCCTCCCTCTCCCCTGACGGTGGCGTCGAGGTCCTCCACCTCG 8091041 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || | | | | | |||| ||||| |||||| || |||||||| | ||| Sbjct 8091040 GCGACCTCCGGCGTCACGATCAC-CTCGATGATCATCTGCGCGATCCGGTCGCCGGGCTT 8090982 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || |||| ||| ||| | | |||||| || | || ||||| ||| |||||||| Sbjct 8090981 CACGGCGAAGTCGGTGTCGGAGTGGTTGAAGAGGATGACCCCCACCGGGCCACGGTAGTC 8090922 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||| ||||| || |||||||||||||| ||||||| | |||||| ||||| Sbjct 8090921 GGCGTCGATCACCCCGGCGCCCACGTCGATCGAGTGCTTCAACGCCAGCCCGGA 8090868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430003622401856