Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq6 95.1 1e-14
seq8 89.7 4e-13
seq2 87.8 2e-12
seq1 82.4 6e-11
>seq6
Length=30401905
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| | || ||| | ||| | ||||| ||| ||| || ||||||||||||||||||
Sbjct 26902855 CCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCC 26902796
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || ||||||| |||||||| ||| | | || | ||||||||| || ||
Sbjct 26902795 AGGGTCCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGAGGG 26902736
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| || ||| ||| | | | || || || | ||||| |
Sbjct 26902735 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACTCGACC 26902676
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||| || ||||| || || || | || |||||||| ||||||||
Sbjct 26902675 TCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 26902629
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| ||||||||||||||||||| || | ||||| |||||||| || | |
Sbjct 26903048 CTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGTCCATCCTCGAGCTGCTTGCCTGCAAA 26902989
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| | |||||||| ||| || | | ||||||||| || ||| ||| | |
Sbjct 26902988 GATGAGGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 26902929
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || || ||||| | |||||| ||| | || ||||| || ||||| || || ||
Sbjct 26902928 GTCG--ATCGTATCAGAAGACTCAACCTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTG 26902871
Query 48713 ACAAAAATCTGCAT 48726
||||||||||||||
Sbjct 26902870 ACAAAAATCTGCAT 26902857
>seq8
Length=23026653
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581
||| || ||| |||||| ||||||||||| |||| ||| || || | ||||| ||||
Sbjct 4139837 ATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-CAAGGGTGCGACCTTCCTCGAGCT 4139895
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
|||| ||| || | || | |||||||| || || | | ||||||||| || |
Sbjct 4139896 GCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCT 4139955
Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
|| ||| | | | ||||| || | |||||| ||| | || |||| || ||||
Sbjct 4139956 TCGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGACTTGCCGG 4140015
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
| || || |||||||| |||||||||
Sbjct 4140016 TCAGGGTCTTCACAAAGATCTGCATC 4140041
>seq2
Length=36083738
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581
|| || ||| |||||| || |||||||| ||||| || ||| || | ||||||||||
Sbjct 2262999 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCATCCTCCAGCT 2263056
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
|||| || | | || | ||||||||| ||| || | | ||||||||| || |
Sbjct 2263057 GCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 2263116
Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
| ||||| | | ||||| || | |||||| ||||| || || || || ||||
Sbjct 2263117 TGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGG 2263176
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
| | || |||||||| |||||||||
Sbjct 2263177 TCAATGTCTTCACAAAGATCTGCATC 2263202
>seq1
Length=43445878
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || || | ||| |||||||||||||||| ||| || |
Sbjct 9972218 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 9972159
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| | |||||||| || ||| | | ||||||||| || ||| ||| | |
Sbjct 9972158 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 9972099
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || ||||| || | |||||| ||| | || || || || || || || || |||
Sbjct 9972098 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 9972041
Query 48713 ACAAAAATCTGCATCGTG 48730
|| || ||||||||| ||
Sbjct 9972040 ACGAAGATCTGCATCTTG 9972023
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || || | ||| |||||||||||||||| ||| || |
Sbjct 9981426 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 9981367
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| | |||||||| || ||| | | ||||||||| || ||| ||| | |
Sbjct 9981366 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 9981307
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || ||||| || | |||||| ||| | || || || || || || || || |||
Sbjct 9981306 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 9981249
Query 48713 ACAAAAATCTGCATCGTG 48730
|| || ||||||||| ||
Sbjct 9981248 ACGAAGATCTGCATCTTG 9981231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421201461817688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |