Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8 116 2e-21 seq1 114 7e-21 seq9 113 2e-20 seq4 113 2e-20 seq2 111 8e-20 seq6619 105 3e-18 seq3 105 3e-18 seq4600 104 1e-17 seq11 100 1e-16 >seq8 Length=23026653 Score = 116 bits (128), Expect = 2e-21 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 20498550 AATAAAAAAT-AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 20498608 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 |||||||| |||| |||||||||| |||| ||||| Sbjct 20498609 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTCGA 20498643 Score = 102 bits (112), Expect = 4e-17 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 17485048 AAAAATTTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 17484989 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 17484988 CTCTAACCAGCTGAGCTAATAGGCC 17484964 >seq1 Length=43445878 Score = 114 bits (126), Expect = 7e-21 Identities = 90/106 (85%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 11437 AATTAATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || |||||||| || ||||||||||||| | | |||||||| ||||||||||||||| Sbjct 10817089 AACTAATAAAAGCAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 10817030 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTG 11540 |||||||||||||| |||| |||||||||| |||| | |||| ||| Sbjct 10817029 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC-TTGACGTTTG 10816985 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 39059912 AACAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 39059853 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 39059852 GACGCTCTAACCAGCTGAGCTAATAGGCC 39059824 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 43389877 AACAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 43389818 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 43389817 GACGCTCTAACCAGCTGAGCTAATAGGCC 43389789 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 31283851 AAAAAAAAAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 31283910 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 31283911 GCTCTAACCAGCTGAGCTAATAGGCC 31283936 Score = 107 bits (118), Expect = 1e-18 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||||| |||||| ||| ||||||||| | | |||||||| |||||||||||||||| Sbjct 31293648 AATTACCGAAAAATAAAAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 31293707 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| |||| |||||||||| ||||| Sbjct 31293708 AGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 31293742 Score = 104 bits (114), Expect = 1e-17 Identities = 78/92 (85%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 21447579 AAGAAAAAATAA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 21447523 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| |||| |||||||||| |||| || Sbjct 21447522 GACGCTCTAACCAGCTGAGCTAATAGGCCATC 21447491 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 38445889 AATAAAAACAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 38445830 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 38445829 GACGCTCTAACCAGCTGAGCTAATAGGCC 38445801 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 13498802 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 13498861 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 13498862 CAGCTGAGCTAATAGGCC 13498879 >seq9 Length=22605696 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 15309992 AAAAAATAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 15310051 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 15310052 GCTCTAACCAGCTGAGCTAATAGGCC 15310077 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||| ||| ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 16214758 AAAAAATAAT-AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 16214700 Query 11501 GACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||| |||| |||||||||| || Sbjct 16214699 GACGCTCTAACCAGCTGAGCTAATAGG 16214673 >seq4 Length=32292456 Score = 113 bits (124), Expect = 2e-20 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| || |||||| |||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 20541521 AGAAAAAAGAAAAAA-CAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 20541579 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||| |||| |||||||||| ||||| Sbjct 20541580 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 20541615 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 20805339 AAAAACAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 20805280 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 20805279 GCTCTAACCAGCTGAGCTAATAGGCC 20805254 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||||| |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 19935310 AAAACAAAATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 19935251 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 19935250 GCTCTAACCAGCTGAGCTAATAGGCC 19935225 >seq2 Length=36083738 Score = 111 bits (122), Expect = 8e-20 Identities = 92/111 (83%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 25560305 AATAGAAAATTTAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 25560364 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGATTGTGATTTT 11547 |||||||||| |||| |||||||||| |||| || |||| || | ||||| Sbjct 25560365 ACGACGCTCTAACCAGCTGAGCTAATAGGCCTTGTTGACGGTTCTCATTTT 25560415 >seq6619 Length=933 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || |||| | | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 839 AATAAATAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 780 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||| ||||| Sbjct 779 GCTCTAACCAGCTGAGCTAATAGGCCG 753 >seq3 Length=46202548 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 6773803 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 6773862 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 6773863 AGCTGAGCTAATAGGCC 6773879 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 20504900 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 20504841 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 20504840 CAGCTGAGCTAATAGGCC 20504823 Score = 100 bits (110), Expect = 1e-16 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| ||| || |||| |||| | | |||||||| ||||||||||||||||||| Sbjct 22366171 AATAAAAGTAATATAAGTGGCACATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 22366112 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 22366111 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 22366081 >seq4600 Length=1268 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 1127 AAAAATTGAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 1068 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||| |||||||||| ||||| Sbjct 1067 CGCTCTAACCAGCTGAGCTAATAGGCCG 1040 >seq11 Length=21200727 Score = 100 bits (110), Expect = 1e-16 Identities = 76/89 (85%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | |||| |||||||| | | ||||||| ||||||||||||||||||||| Sbjct 507652 AATAAAAGAGGAAAT-GGCCCATGCAGGTCTCGAACCAGCGACCTTCGCGTTATTAGCAC 507710 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 507711 GACGCTCTAACCAGCTGAGCTAATAGGCC 507739 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261460325080288