Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq8 116 2e-21
seq1 114 7e-21
seq9 113 2e-20
seq4 113 2e-20
seq2 111 8e-20
seq6619 105 3e-18
seq3 105 3e-18
seq4600 104 1e-17
seq11 100 1e-16
>seq8
Length=23026653
Score = 116 bits (128), Expect = 2e-21
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||||||| || |||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 20498550 AATAAAAAAT-AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 20498608
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534
|||||||| |||| |||||||||| |||| |||||
Sbjct 20498609 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTCGA 20498643
Score = 102 bits (112), Expect = 4e-17
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| | ||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 17485048 AAAAATTTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 17484989
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||| |||||||||| ||||
Sbjct 17484988 CTCTAACCAGCTGAGCTAATAGGCC 17484964
>seq1
Length=43445878
Score = 114 bits (126), Expect = 7e-21
Identities = 90/106 (85%), Gaps = 3/106 (3%)
Strand=Plus/Minus
Query 11437 AATTAATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|| |||||||| || ||||||||||||| | | |||||||| |||||||||||||||
Sbjct 10817089 AACTAATAAAAGCAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 10817030
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTG 11540
|||||||||||||| |||| |||||||||| |||| | |||| |||
Sbjct 10817029 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC-TTGACGTTTG 10816985
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 39059912 AACAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 39059853
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||| ||||
Sbjct 39059852 GACGCTCTAACCAGCTGAGCTAATAGGCC 39059824
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 43389877 AACAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 43389818
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||| ||||
Sbjct 43389817 GACGCTCTAACCAGCTGAGCTAATAGGCC 43389789
Score = 107 bits (118), Expect = 1e-18
Identities = 75/86 (87%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || |||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 31283851 AAAAAAAAAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 31283910
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||| ||||
Sbjct 31283911 GCTCTAACCAGCTGAGCTAATAGGCC 31283936
Score = 107 bits (118), Expect = 1e-18
Identities = 81/95 (85%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||||| |||||| ||| ||||||||| | | |||||||| ||||||||||||||||
Sbjct 31293648 AATTACCGAAAAATAAAAGATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 31293707
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||| |||| |||||||||| |||||
Sbjct 31293708 AGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 31293742
Score = 104 bits (114), Expect = 1e-17
Identities = 78/92 (85%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 21447579 AAGAAAAAATAA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 21447523
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||||||| |||| |||||||||| |||| ||
Sbjct 21447522 GACGCTCTAACCAGCTGAGCTAATAGGCCATC 21447491
Score = 104 bits (114), Expect = 1e-17
Identities = 76/89 (85%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||||||| || ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 38445889 AATAAAAACAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 38445830
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||| ||||
Sbjct 38445829 GACGCTCTAACCAGCTGAGCTAATAGGCC 38445801
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 13498802 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 13498861
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 13498862 CAGCTGAGCTAATAGGCC 13498879
>seq9
Length=22605696
Score = 113 bits (124), Expect = 2e-20
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| |||||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 15309992 AAAAAATAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 15310051
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||| ||||
Sbjct 15310052 GCTCTAACCAGCTGAGCTAATAGGCC 15310077
Score = 105 bits (116), Expect = 3e-18
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||| ||| ||||||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 16214758 AAAAAATAAT-AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 16214700
Query 11501 GACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||| |||| |||||||||| ||
Sbjct 16214699 GACGCTCTAACCAGCTGAGCTAATAGG 16214673
>seq4
Length=32292456
Score = 113 bits (124), Expect = 2e-20
Identities = 83/96 (86%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|||| || |||||| |||| ||||||||| | | |||||||| |||||||||||||||
Sbjct 20541521 AGAAAAAAGAAAAAA-CAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 20541579
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||||||||| |||| |||||||||| |||||
Sbjct 20541580 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 20541615
Score = 105 bits (116), Expect = 3e-18
Identities = 75/86 (87%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| ||||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 20805339 AAAAACAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 20805280
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||| ||||
Sbjct 20805279 GCTCTAACCAGCTGAGCTAATAGGCC 20805254
Score = 100 bits (110), Expect = 1e-16
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 11446 AAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| ||||| |||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 19935310 AAAACAAAATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 19935251
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||| ||||
Sbjct 19935250 GCTCTAACCAGCTGAGCTAATAGGCC 19935225
>seq2
Length=36083738
Score = 111 bits (122), Expect = 8e-20
Identities = 92/111 (83%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 11441 AATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|||| ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||
Sbjct 25560305 AATAGAAAATTTAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 25560364
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGATTGTGATTTT 11547
|||||||||| |||| |||||||||| |||| || |||| || | |||||
Sbjct 25560365 ACGACGCTCTAACCAGCTGAGCTAATAGGCCTTGTTGACGGTTCTCATTTT 25560415
>seq6619
Length=933
Score = 105 bits (116), Expect = 3e-18
Identities = 75/87 (86%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|| |||| | | ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 839 AATAAATAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 780
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| |||| |||||||||| |||||
Sbjct 779 GCTCTAACCAGCTGAGCTAATAGGCCG 753
>seq3
Length=46202548
Score = 105 bits (116), Expect = 3e-18
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 6773803 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 6773862
Query 11513 AACTGAGCTAATGGGCC 11529
| |||||||||| ||||
Sbjct 6773863 AGCTGAGCTAATAGGCC 6773879
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 20504900 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 20504841
Query 11512 CAACTGAGCTAATGGGCC 11529
|| |||||||||| ||||
Sbjct 20504840 CAGCTGAGCTAATAGGCC 20504823
Score = 100 bits (110), Expect = 1e-16
Identities = 77/91 (85%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 11441 AATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
||||||| ||| || |||| |||| | | |||||||| |||||||||||||||||||
Sbjct 22366171 AATAAAAGTAATATAAGTGGCACATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 22366112
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| |||| |||||||||| ||||
Sbjct 22366111 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 22366081
>seq4600
Length=1268
Score = 104 bits (114), Expect = 1e-17
Identities = 76/88 (86%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
||||| | ||| ||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 1127 AAAAATTGAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 1068
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||| |||| |||||||||| |||||
Sbjct 1067 CGCTCTAACCAGCTGAGCTAATAGGCCG 1040
>seq11
Length=21200727
Score = 100 bits (110), Expect = 1e-16
Identities = 76/89 (85%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||| | |||| |||||||| | | ||||||| |||||||||||||||||||||
Sbjct 507652 AATAAAAGAGGAAAT-GGCCCATGCAGGTCTCGAACCAGCGACCTTCGCGTTATTAGCAC 507710
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||| ||||
Sbjct 507711 GACGCTCTAACCAGCTGAGCTAATAGGCC 507739
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261460325080288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |