Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq5 132 8e-27
seq3 129 9e-26
seq4 127 3e-25
seq1 123 4e-24
seq9 120 5e-23
seq7 120 5e-23
seq11 116 6e-22
>seq5
Length=25164199
Score = 132 bits (146), Expect = 8e-27
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | || || ||||||||||| || ||||||||||| || ||
Sbjct 18830664 CGCCAAGCGTCACCGGAAGGTGCTCCGCGATAACATCCAGGGGATCACCAAGCCGGCGAT 18830723
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| | ||||| | | || || || ||||| |||| || || |||| || ||||
Sbjct 18830724 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 18830783
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | |||||||||||| ||| ||| |||| || || || ||| |||||
Sbjct 18830784 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 18830843
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || ||||| |||||| ||||||| ||||||| || | || || || ||
Sbjct 18830844 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 18830903
Query 16672 CCG 16674
|||
Sbjct 18830904 CCG 18830906
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| || | || || || |||||||| || ||||||||||| || ||
Sbjct 18704971 CGCCAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGAT 18704912
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| | ||||| | | || || || ||||| |||| || | |||| || ||||
Sbjct 18704911 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 18704852
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | |||||||||||| ||| ||| |||| || || || ||| |||||
Sbjct 18704851 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 18704792
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || ||||| |||||| ||||||| ||||||| || | || || || ||
Sbjct 18704791 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 18704732
Query 16672 CCG 16674
|||
Sbjct 18704731 CCG 18704729
Score = 123 bits (136), Expect = 4e-24
Identities = 191/270 (71%), Gaps = 2/270 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||| ||| ||||| | ||| |||| | |||||||||| ||||||||||| | ||
Sbjct 18709986 GCTAGGCGCCATCGGATTGTCT-TTCGCGGCTACATCCAAGGCATCACCAAGCCGGTGAT 18709928
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || || || | ||||| || ||||| |||| || ||| |||| ||||||
Sbjct 18709927 CCGACGCCTTGCAAGGAAGGGTGGCGTGAAGCGCATCTCAGGGTTGATCTACAAAGAGAC 18709868
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||||| || | ||||||||||||||| || |||| ||||| | ||| ||| |
Sbjct 18709867 TCGTGGCGTGCTCGAGATCTTCCTCAAGAATGTCATCCGCGATGCCATTACCTACACCAA 18709808
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| ||| | || ||||| |||| |||||||| |||| || | | || | ||| ||
Sbjct 18709807 GCATGCTTACCGCAAGACCGTCATGACCATGGATGTCGTATACACGCTCAAGCTTCAGGG 18709748
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701
||| | || ||||| || || ||| |||
Sbjct 18709747 CCGCACCATCTATGGCTTCGGCGGTTGATC 18709718
>seq3
Length=46202548
Score = 129 bits (142), Expect = 9e-26
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| || ||||| | | ||
Sbjct 1863752 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCGAGGAGGGGC 1863693
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || || |||| || |||| || | || | |||||||||
Sbjct 1863692 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 1863633
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| |||||||| || || || ||| || |||||||| || ||||| |||
Sbjct 1863632 CTCGAGAACGTTATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 1863573
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| ||||||| || | || || || |||||
Sbjct 1863572 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 1863532
Score = 123 bits (136), Expect = 4e-24
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| || ||||| | | ||
Sbjct 1859524 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCGAGGAGGGGC 1859465
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || || |||| || |||| || | || | |||||||||
Sbjct 1859464 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 1859405
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| || || || ||| || |||||||| || ||||| |||
Sbjct 1859404 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 1859345
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| ||||||| || | || || || |||||
Sbjct 1859344 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 1859304
>seq4
Length=32292456
Score = 127 bits (140), Expect = 3e-25
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 24385964 CGCGAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGAT 24386023
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| | ||||| | | || || |||||||| |||| || | |||| || ||||
Sbjct 24386024 CCGGAGGCTGGCGAGGAGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 24386083
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | |||||||||||| ||| ||| |||| || || || ||| |||||
Sbjct 24386084 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 24386143
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || ||||| |||||| ||||||| ||||||| || | || || || ||
Sbjct 24386144 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 24386203
Query 16672 CCG 16674
|||
Sbjct 24386204 CCG 24386206
>seq1
Length=43445878
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||| | ||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 33135710 CGCGAAGAGGCATCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 33135769
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| | ||||| | | || || || ||||| |||| || || |||| || ||||
Sbjct 33135770 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 33135829
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | |||||||||||| ||| ||| |||| || || || ||| || ||
Sbjct 33135830 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 33135889
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || ||||| |||||| ||||||| ||||||| || | || || || ||
Sbjct 33135890 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 33135949
Query 16672 CCG 16674
|||
Sbjct 33135950 CCG 33135952
>seq9
Length=22605696
Score = 120 bits (132), Expect = 5e-23
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||| ||||| || ||||| | ||||| | | ||
Sbjct 21142762 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 21142703
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || || |||| || |||| || | || | |||||||||
Sbjct 21142702 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 21142643
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| || || || ||| ||||||||||| || ||||| |||
Sbjct 21142642 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 21142583
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| ||||||| || | || || || |||||
Sbjct 21142582 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 21142542
Score = 111 bits (122), Expect = 2e-20
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||| ||||| || ||||| | ||||| | | ||
Sbjct 12908960 CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 12908901
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || | |||| || |||| || | || | |||||||||
Sbjct 12908900 GGGGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGATCTTC 12908841
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| || || || ||| ||||| ||||| || ||||| |||
Sbjct 12908840 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAACACGCCCGCCGCAAGACCGTC 12908781
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| ||||||| || | || || || |||||
Sbjct 12908780 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 12908740
Score = 111 bits (122), Expect = 2e-20
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||| ||||| || ||||| | ||||| | | ||
Sbjct 22393414 CTGCGGGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 22393473
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || || | || || |||| || | || | |||||||||
Sbjct 22393474 GGGGTGAAGCGCATCTCCGGGCTGATATACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 22393533
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| || || || ||| || |||||||| || ||||| |||
Sbjct 22393534 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 22393593
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| ||||||| || | || || || |||||
Sbjct 22393594 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 22393634
>seq7
Length=26479886
Score = 120 bits (132), Expect = 5e-23
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||| ||||| || ||||| | ||||| | | ||
Sbjct 18712981 CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 18712922
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || | |||| || |||| ||| | || | |||||||||
Sbjct 18712921 GGGGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGATCTTC 18712862
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| || || || ||| ||||||||||| || ||||| |||
Sbjct 18712861 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 18712802
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| ||||||| || | || || || |||||
Sbjct 18712801 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 18712761
>seq11
Length=21200727
Score = 116 bits (128), Expect = 6e-22
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||| || |||| || || || |||||||| || ||||||||||| || |||
Sbjct 12073131 GCGAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATC 12073072
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| | ||||| | | || || || ||||| |||| || | |||| || ||||
Sbjct 12073071 CGGAGGCTGGCGAGGAGGGGGGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACC 12073012
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || | |||||||||||| ||| ||| |||| || || || ||| || |||
Sbjct 12073011 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAG 12072952
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || ||||| |||||| ||||||| ||||||| || | || || || |||
Sbjct 12072951 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGC 12072892
Query 16673 CG 16674
||
Sbjct 12072891 CG 12072890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79066342193784
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