Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq10 545 7e-151
seq8 545 7e-151
seq7 545 7e-151
>seq10
Length=17164355
Score = 545 bits (604), Expect = 7e-151
Identities = 708/976 (73%), Gaps = 2/976 (0%)
Strand=Plus/Plus
Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358
||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| |||
Sbjct 15960375 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 15960434
Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418
|||| | | || ||| || ||||| ||||||| ||||| || || || ||||||
Sbjct 15960435 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 15960494
Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478
|| ||||| || |||||||| ||||| || || ||| | ||||||||||||||||| |||
Sbjct 15960495 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 15960554
Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538
|| || | |||| | || || || ||| |||||||||| || || ||||||||
Sbjct 15960555 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 15960614
Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598
| || | ||||||||||||||||| |||||||| ||| | || |||| | ||||||
Sbjct 15960615 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 15960674
Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658
||| | || ||||| || ||| | |||||||||| || | | | || |||
Sbjct 15960675 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 15960734
Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718
| || ||||| || |||||| |||| || | |||| ||| ||||| |||||
Sbjct 15960735 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGT-TTTCTT 15960793
Query 19719 G-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777
| ||||||| |||| ||||| ||||| ||||||||||||| | || || ||||||||
Sbjct 15960794 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 15960853
Query 19778 TTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837
||| ||||||||| | |||||||| ||||| || || |||||||||||||| || |||||
Sbjct 15960854 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 15960913
Query 19838 GCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGT 19897
| | ||||| ||||| |||||||| || || || ||| ||||||||| || |||||
Sbjct 15960914 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 15960973
Query 19898 TACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTT 19957
|| || | |||| |||||| ||||| | | ||| || | || || | ||
Sbjct 15960974 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 15961033
Query 19958 CGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGAT 20017
|| ||||| |||||||| ||||||||||| || || || || || ||||| |||| ||
Sbjct 15961034 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 15961093
Query 20018 ATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCC 20077
|| ||||||||| ||| || || |||||||||||||| ||||| | ||| ||| ||
Sbjct 15961094 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 15961153
Query 20078 CGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137
|| || || || ||| | || | | || || | |||||||||||||| || || ||
Sbjct 15961154 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 15961213
Query 20138 TTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGA 20197
|| || || ||||| || ||||||||| | | || | || || ||||||||
Sbjct 15961214 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 15961273
Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257
| | | || | ||||| || || | ||||| |||||||| || |||||||| |||||
Sbjct 15961274 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 15961333
Query 20258 CCCACTTGATTTAGCT 20273
||| || || |||||
Sbjct 15961334 CCCTCTAGACCTAGCT 15961349
>seq8
Length=23026653
Score = 545 bits (604), Expect = 7e-151
Identities = 708/976 (73%), Gaps = 2/976 (0%)
Strand=Plus/Plus
Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358
||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| |||
Sbjct 17290465 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 17290524
Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418
|||| | | || ||| || ||||| ||||||| ||||| || || || ||||||
Sbjct 17290525 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 17290584
Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478
|| ||||| || |||||||| ||||| || || ||| | ||||||||||||||||| |||
Sbjct 17290585 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 17290644
Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538
|| || | |||| | || || || ||| |||||||||| || || ||||||||
Sbjct 17290645 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 17290704
Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598
| || | ||||||||||||||||| |||||||| ||| | || |||| | ||||||
Sbjct 17290705 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 17290764
Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658
||| | || ||||| || ||| | |||||||||| || | | | || |||
Sbjct 17290765 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 17290824
Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718
| || ||||| || |||||| |||| || | |||| ||| ||||| |||||
Sbjct 17290825 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGT-TTTCTT 17290883
Query 19719 G-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777
| ||||||| |||| ||||| ||||| ||||||||||||| | || || ||||||||
Sbjct 17290884 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 17290943
Query 19778 TTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837
||| ||||||||| | |||||||| ||||| || || |||||||||||||| || |||||
Sbjct 17290944 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 17291003
Query 19838 GCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGT 19897
| | ||||| ||||| |||||||| || || || ||| ||||||||| || |||||
Sbjct 17291004 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 17291063
Query 19898 TACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTT 19957
|| || | |||| |||||| ||||| | | ||| || | || || | ||
Sbjct 17291064 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 17291123
Query 19958 CGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGAT 20017
|| ||||| |||||||| ||||||||||| || || || || || ||||| |||| ||
Sbjct 17291124 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 17291183
Query 20018 ATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCC 20077
|| ||||||||| ||| || || |||||||||||||| ||||| | ||| ||| ||
Sbjct 17291184 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 17291243
Query 20078 CGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137
|| || || || ||| | || | | || || | |||||||||||||| || || ||
Sbjct 17291244 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 17291303
Query 20138 TTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGA 20197
|| || || ||||| || ||||||||| | | || | || || ||||||||
Sbjct 17291304 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 17291363
Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257
| | | || | ||||| || || | ||||| |||||||| || |||||||| |||||
Sbjct 17291364 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 17291423
Query 20258 CCCACTTGATTTAGCT 20273
||| || || |||||
Sbjct 17291424 CCCTCTAGACCTAGCT 17291439
Score = 105 bits (116), Expect = 2e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 19911 ATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAA 19970
|||| |||||| ||||| | | ||| || | || || || || || ||||| |||
Sbjct 13113463 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAA 13113522
Query 19971 GAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCT 20030
||||| ||||||||| | || || || || || ||||| |||| || || |||||||||
Sbjct 13113523 GAGACTTATAATATTATGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 13113582
Query 20031 TCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT-GCTACTTTCCCCGTGGTTGGCAT 20089
||| || || |||||||||||||| || |||||| ||| ||| | || || || ||
Sbjct 13113583 AGTTTTAACAACTCTCGTTCTTTACACTT-TTTCTTGGCTGCTTGGCATGTAGTAGGGAT 13113641
Query 20090 ATGGCTTACCTC 20101
||| | | |||
Sbjct 13113642 TTGGTTCATCTC 13113653
>seq7
Length=26479886
Score = 545 bits (604), Expect = 7e-151
Identities = 708/976 (73%), Gaps = 2/976 (0%)
Strand=Plus/Plus
Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358
||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| |||
Sbjct 22562194 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 22562253
Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418
|||| | | || ||| || ||||| ||||||| ||||| || || || ||||||
Sbjct 22562254 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 22562313
Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478
|| ||||| || |||||||| ||||| || || ||| | ||||||||||||||||| |||
Sbjct 22562314 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 22562373
Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538
|| || | |||| | || || || ||| |||||||||| || || ||||||||
Sbjct 22562374 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 22562433
Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598
| || | ||||||||||||||||| |||||||| ||| | || |||| | ||||||
Sbjct 22562434 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 22562493
Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658
||| | || ||||| || ||| | |||||||||| || | | | || |||
Sbjct 22562494 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 22562553
Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718
| || ||||| || |||||| |||| || | |||| ||| ||||| |||||
Sbjct 22562554 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGT-TTTCTT 22562612
Query 19719 G-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777
| ||||||| |||| ||||| ||||| ||||||||||||| | || || ||||||||
Sbjct 22562613 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 22562672
Query 19778 TTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837
||| ||||||||| | |||||||| ||||| || || |||||||||||||| || |||||
Sbjct 22562673 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 22562732
Query 19838 GCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGT 19897
| | ||||| ||||| |||||||| || || || ||| ||||||||| || |||||
Sbjct 22562733 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 22562792
Query 19898 TACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTT 19957
|| || | |||| |||||| ||||| | | ||| || | || || | ||
Sbjct 22562793 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 22562852
Query 19958 CGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGAT 20017
|| ||||| |||||||| ||||||||||| || || || || || ||||| |||| ||
Sbjct 22562853 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 22562912
Query 20018 ATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCC 20077
|| ||||||||| ||| || || |||||||||||||| ||||| | ||| ||| ||
Sbjct 22562913 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 22562972
Query 20078 CGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137
|| || || || ||| | || | | || || | |||||||||||||| || || ||
Sbjct 22562973 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 22563032
Query 20138 TTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGA 20197
|| || || ||||| || ||||||||| | | || | || || ||||||||
Sbjct 22563033 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 22563092
Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257
| | | || | ||||| || || | ||||| |||||||| || |||||||| |||||
Sbjct 22563093 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 22563152
Query 20258 CCCACTTGATTTAGCT 20273
||| || || |||||
Sbjct 22563153 CCCTCTAGACCTAGCT 22563168
Score = 185 bits (204), Expect = 3e-42
Identities = 224/305 (73%), Gaps = 0/305 (0%)
Strand=Plus/Plus
Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358
||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| |||
Sbjct 22561870 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 22561929
Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418
|||| | | || ||| || ||||| ||||||| ||||| || || || ||||||
Sbjct 22561930 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 22561989
Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478
|| |||| || |||| || ||||| || || ||| | ||||||||||||||||| |||
Sbjct 22561990 ATTGATGATATTCGTGGGCATGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 22562049
Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538
|| || | |||| | || || || ||| || ||||||| || || ||||||||
Sbjct 22562050 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGAACTTTTACCCAATTTGGGAAGCT 22562109
Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598
| || | ||||||||||||||||| |||||||| ||| | || |||| | ||||||
Sbjct 22562110 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 22562169
Query 19599 TTAAT 19603
|||||
Sbjct 22562170 TTAAT 22562174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144424982716128
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