Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq10 540 2e-148 seq8 540 2e-148 seq7 540 2e-148 >seq10 Length=17164355 Score = 540 bits (598), Expect = 2e-148 Identities = 714/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 15960366 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 15960424 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 15960425 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCC 15960483 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || | || || |||| Sbjct 15960484 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACA 15960543 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||||||||| || |||| |||| || ||||| || ||||| || || | Sbjct 15960544 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 15960603 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||| ||| || ||||||||||| | |||||||| |||||||| || | | Sbjct 15960604 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTG 15960663 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | || ||||| | |||||||||| | || Sbjct 15960664 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 15960723 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | ||||||||||||||||| |||||| |||||||| ||||| |||| ||| || Sbjct 15960724 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 15960783 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | ||||||| | ||||| || ||||| || |||||||||||||| | Sbjct 15960784 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 15960843 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 |||| || || |||||||| ||| | |||||||| ||||| ||||||||||||||||| | Sbjct 15960844 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 15960903 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| |||||| || ||| | ||||| || | ||||| ||||||||| | Sbjct 15960904 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 15960963 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| | |||||||||| || || || | | Sbjct 15960964 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 15961023 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||||| || || ||||| |||||||| ||||| || || || || ||||| || || | Sbjct 15961024 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 15961083 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 | || | |||||||| ||||| || |||||| | ||||||||||||| | | Sbjct 15961084 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 15961143 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | |||||||| | | | ||||| || || | ||||| | || ||||| |||| Sbjct 15961144 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 15961203 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 | ||||| |||||||| ||||||||||| || |||||| |||| ||| || || Sbjct 15961204 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA 15961263 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | | ||| | || || |||||||||||||| ||||||||| | |||| Sbjct 15961264 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 15961323 Query 212528 CACACAACTTCCCACTTGACTTAGC 212552 | ||||||||||| || ||| |||| Sbjct 15961324 CTCACAACTTCCCTCTAGACCTAGC 15961348 >seq8 Length=23026653 Score = 540 bits (598), Expect = 2e-148 Identities = 714/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 17290456 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 17290514 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 17290515 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCC 17290573 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || | || || |||| Sbjct 17290574 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACA 17290633 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||||||||| || |||| |||| || ||||| || ||||| || || | Sbjct 17290634 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 17290693 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||| ||| || ||||||||||| | |||||||| |||||||| || | | Sbjct 17290694 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTG 17290753 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | || ||||| | |||||||||| | || Sbjct 17290754 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 17290813 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | ||||||||||||||||| |||||| |||||||| ||||| |||| ||| || Sbjct 17290814 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 17290873 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | ||||||| | ||||| || ||||| || |||||||||||||| | Sbjct 17290874 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 17290933 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 |||| || || |||||||| ||| | |||||||| ||||| ||||||||||||||||| | Sbjct 17290934 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 17290993 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| |||||| || ||| | ||||| || | ||||| ||||||||| | Sbjct 17290994 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 17291053 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| | |||||||||| || || || | | Sbjct 17291054 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 17291113 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||||| || || ||||| |||||||| ||||| || || || || ||||| || || | Sbjct 17291114 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 17291173 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 | || | |||||||| ||||| || |||||| | ||||||||||||| | | Sbjct 17291174 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 17291233 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | |||||||| | | | ||||| || || | ||||| | || ||||| |||| Sbjct 17291234 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 17291293 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 | ||||| |||||||| ||||||||||| || |||||| |||| ||| || || Sbjct 17291294 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA 17291353 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | | ||| | || || |||||||||||||| ||||||||| | |||| Sbjct 17291354 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 17291413 Query 212528 CACACAACTTCCCACTTGACTTAGC 212552 | ||||||||||| || ||| |||| Sbjct 17291414 CTCACAACTTCCCTCTAGACCTAGC 17291438 >seq7 Length=26479886 Score = 540 bits (598), Expect = 2e-148 Identities = 714/985 (72%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 22562185 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 22562243 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 22562244 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCC 22562302 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || ||||| || || ||||||| || | || || |||| Sbjct 22562303 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACA 22562362 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||||||||| || |||| |||| || ||||| || ||||| || || | Sbjct 22562363 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 22562422 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 | |||||||| ||| || ||||||||||| | |||||||| |||||||| || | | Sbjct 22562423 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTG 22562482 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | || ||||| | |||||||||| | || Sbjct 22562483 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 22562542 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | ||||||||||||||||| |||||| |||||||| ||||| |||| ||| || Sbjct 22562543 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCG 22562602 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | ||||||| | ||||| || ||||| || |||||||||||||| | Sbjct 22562603 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 22562662 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 |||| || || |||||||| ||| | |||||||| ||||| ||||||||||||||||| | Sbjct 22562663 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 22562722 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| |||||| || ||| | ||||| || | ||||| ||||||||| | Sbjct 22562723 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 22562782 Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227 |||| | || || ||| | ||| | |||||||||| || || || | | Sbjct 22562783 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 22562842 Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287 |||||| || || ||||| |||||||| ||||| || || || || ||||| || || | Sbjct 22562843 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 22562902 Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347 | || | |||||||| ||||| || |||||| | ||||||||||||| | | Sbjct 22562903 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 22562962 Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407 | | |||||||| | | | ||||| || || | ||||| | || ||||| |||| Sbjct 22562963 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 22563022 Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467 | ||||| |||||||| ||||||||||| || |||||| |||| ||| || || Sbjct 22563023 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA 22563082 Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527 |||||| |||| | | ||| | || || |||||||||||||| ||||||||| | |||| Sbjct 22563083 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 22563142 Query 212528 CACACAACTTCCCACTTGACTTAGC 212552 | ||||||||||| || ||| |||| Sbjct 22563143 CTCACAACTTCCCTCTAGACCTAGC 22563167 Score = 141 bits (156), Expect = 2e-28 Identities = 208/289 (72%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| | Sbjct 22561861 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 22561919 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 22561920 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCC 22561978 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || | || |||| | || ||||||| || | || || |||| Sbjct 22561979 CTCCAGTAGATATTGATGATATTCGTGGGCATGTTTCTGGTTCTTTACTTTACGGAAACA 22562038 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||||||||| || |||| |||| || ||||| || |||| || || | Sbjct 22562039 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGAACTTTTACCCAA 22562098 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 | |||||||| ||| || ||||||||||| | |||||||| |||||||| Sbjct 22562099 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTA 22562147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807457405065280