Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq5 104 3e-17
seq6 91.5 2e-13
>seq5
Length=25164199
Score = 104 bits (114), Expect = 3e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670
||| || ||||| || | ||| || ||||| || |||||||| | ||| | ||||
Sbjct 3366443 AGTGCCAGCATTGAAAAGGGTCGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAGATG 3366502
Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729
||| |||| ||||| || || || || | ||| || || || |||| || | |||||
Sbjct 3366503 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 3366561
Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789
|||||||||| || |||||||| | ||| | | ||||| | ||| ||| | ||||
Sbjct 3366562 ACATGTGCTGTGGCCTTTCAACAACCTTCCCGCCAAGTTTCAGGAGGTAAGATCTCTCCA 3366621
Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
||| || ||||||||||||| || ||||| | || ||||| ||
Sbjct 3366622 GAGTCTTGAAACCAAAATAGTCATAATCGAAGTCCCTATCATAAATTAT 3366670
>seq6
Length=30401905
Score = 91.5 bits (100), Expect = 2e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| ||||||||||| |||||||| | || || |||||||| || |||||
Sbjct 11442850 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 11442791
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || || ||||| || ||||| || |||| ||| || || || ||||||
Sbjct 11442790 CCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 11442731
Query 33424 ATTCCTTCTACTGCA-GCAAAGGC 33446
|| || || || ||| || |||||
Sbjct 11442730 ATCCCCTCGAC-GCAGGCGAAGGC 11442708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622871761094080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |