Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 104 6e-17 seq5 98.7 3e-15 seq11 89.7 1e-12 seq6 89.7 1e-12 >seq2 Length=36083738 Score = 104 bits (114), Expect = 6e-17 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| ||| ||||| || | |||||| || | ||||| ||||| || Sbjct 34745860 ATGAAAGATGATAGCATTGAGGGAATTTATGACACTCTCTCAGAAT-GTGCTACCATAAG 34745802 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || ||||||||| | || || |||||| || | || || | ||||||| Sbjct 34745801 CAAATGTGCTGGTGGAATTGGTCTCTCAATTCACAATATTAGAGCTACTGGG-AGTTACA 34745743 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || ||| ||| || |||||| | ||||||||||| ||||| || | ||| Sbjct 34745742 TTCGAGGAACAAATGGAACATCTAATGGGATTGTTCCCATGCTGCGTGTTTTCAATGATA 34745683 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || |||||||| ||| | ||||| Sbjct 34745682 CTGCACGTTATGTTGATCAAGGTGGAGGGAAGAGAAAAGG 34745643 >seq5 Length=25164199 Score = 98.7 bits (108), Expect = 3e-15 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || | ||| | |||||| | || | Sbjct 3366327 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGC 3366268 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || |||||||||||||| | |||||| |||| || || | || || || Sbjct 3366267 AAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTG-GGAGCTATAT 3366209 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| |||||| | ||||| ||||| ||||| || | |||| Sbjct 3366208 CCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATAC 3366149 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || |||||||| ||| | |||||| Sbjct 3366148 TGCCCGTTATGTTGATCAAGGTGGAGGCAAGAG-AAAGGG 3366110 >seq11 Length=21200727 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | |||| ||| |||||||| |||||||| || ||||||||||| Sbjct 12983431 CCAGTTTTATGTTGAGAGCGGGGAGCTATCATGCCAGATGTATCAACGCTCTGCTGATAT 12983372 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || ||||||||||| || || |||||| || | || || || | | | || ||||| Sbjct 12983371 GGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCA 12983312 Query 111821 TTTT 111824 | || Sbjct 12983311 TGTT 12983308 >seq6 Length=30401905 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/183 (71%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || |||||| ||| || | ||| |||||||||| |||| |||||||||||||| ||| Sbjct 7710868 GCGCCATGAGCAATCATACAGTCCCTCTCCATCTCTCCAAACCGGAGACCACCATCACGT 7710927 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGG----TTGCGTGC 371215 || || || |||| || | ||||||| ||| | ||| ||| | | ||| Sbjct 7710928 GAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGCACAGGACCACGGCCTCTAGAGTGA 7710987 Query 371216 ATGTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAAT 371275 || ||||||| | ||||||||||| || | ||| |||||| ||| ||| ||||| Sbjct 7710988 AT----CTTGTCATCCACCATGTGCTTAAGTCTCTGGTAATAAGTAGGACCAAGGAAAAT 7711043 Query 371276 CAT 371278 ||| Sbjct 7711044 CAT 7711046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303191817976016