Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 seq4 87.8 1e-12 >seq3 Length=46202548 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 13428013 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 13428072 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 13428073 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 13428107 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 13438497 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 13438556 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 13438557 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 13438591 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 13430127 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13430186 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 13430187 GCCTGTATTTAGCCTT 13430202 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||| || ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 13431086 CTCTCTTTTCAA-GTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13431144 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 13431145 GCCTGTATTTAGCCTT 13431160 >seq4 Length=32292456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| || ||| ||||||||||||| ||||||||| |||| || |||||||| Sbjct 22912854 AAGCCCATTATCTTCGCTGTGGTTTCGCGGGATAGTAGACAGGGACAGTGGGAATCTCGT 22912795 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAG 25984 |||||| |||||| |||||| ||||||| Sbjct 22912794 TAATCCATTCATGGGCGTCATTAATTAG 22912767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334907651946728