Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3 131 1e-25
seq4 87.8 1e-12
>seq3
Length=46202548
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 13428013 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 13428072
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 13428073 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 13428107
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 13438497 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 13438556
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 13438557 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 13438591
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 13430127 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13430186
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 13430187 GCCTGTATTTAGCCTT 13430202
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||| || ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 13431086 CTCTCTTTTCAA-GTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13431144
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 13431145 GCCTGTATTTAGCCTT 13431160
>seq4
Length=32292456
Score = 87.8 bits (96), Expect = 1e-12
Identities = 72/88 (82%), Gaps = 5/88 (6%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| || ||| ||||||||||||| ||||||||| |||| || ||||||||
Sbjct 22912854 AAGCCCATTATCTTCGCTGTGGTTTCGCGGGATAGTAGACAGGGACAGTGGGAATCTCGT 22912795
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAG 25984
|||||| |||||| |||||| |||||||
Sbjct 22912794 TAATCCATTCATGGGCGTCATTAATTAG 22912767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334907651946728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |