Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq10 95.1 1e-14
seq7 91.5 2e-13
seq3 89.7 6e-13
seq2 89.7 6e-13
seq4 87.8 2e-12
seq12 86.0 7e-12
seq5 84.2 2e-11
seq1 82.4 8e-11
>seq10
Length=17164355
Score = 95.1 bits (104), Expect = 1e-14
Identities = 80/96 (83%), Gaps = 3/96 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 12340440 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTACCGAGGGC 12340499
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358
|||||||| || ||||| ||||| ||||||| |||
Sbjct 12340500 GTGGGTTCAAATCCCACTTCTGAC-AATTATTTTTG 12340534
>seq7
Length=26479886
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/92 (83%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 8054132 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 8054073
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||| || ||||| |||||| ||| ||
Sbjct 8054072 GTGGGTTCAAATCCCACTTCTGACAGATTTTT 8054041
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/92 (82%), Gaps = 4/92 (4%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 21700769 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 21700826
Query 126328 TTCGAACCCCACACCTG--ACAAATTATTATT 126357
||| || |||||| ||| |||||| ||| ||
Sbjct 21700827 TTCAAATCCCACAGCTGTCACAAATCATTTTT 21700858
>seq3
Length=46202548
Score = 89.7 bits (98), Expect = 6e-13
Identities = 84/106 (79%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 43597685 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 43597744
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||||||| || ||||| |||||| | | |||| | ||||| ||
Sbjct 43597745 TGGGTTCAAATCCCACTTCTGACATAATTTTATCGTCTTTTTTTTT 43597790
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| || | |||
Sbjct 3845624 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCTTACGAGGGCG 3845565
Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348
||||||| || ||||| |||||||
Sbjct 3845564 TGGGTTCAAATCCCACTTCTGACAA 3845540
>seq2
Length=36083738
Score = 89.7 bits (98), Expect = 6e-13
Identities = 86/107 (80%), Gaps = 5/107 (5%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 35233610 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 35233669
Query 126323 GTGGGTTCGAACCCCACACCTGACA--AATTATTAT-TGGAATTTTT 126366
|||||||| || ||||| |||||| |||| || | | | ||||||
Sbjct 35233670 GTGGGTTCAAATCCCACTTCTGACATTAATTTTTTTCTTGCATTTTT 35233716
Score = 82.4 bits (90), Expect = 8e-11
Identities = 79/98 (81%), Gaps = 5/98 (5%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 19140772 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19140829
Query 126328 TTCGAACCCCACACCTGACAA-ATTATTATTGGAATTT 126364
||| || |||||| ||| ||| ||||| || |||||
Sbjct 19140830 TTCAAATCCCACAGCTGTCAATTTTATTTTT--AATTT 19140865
>seq4
Length=32292456
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/102 (79%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 14373246 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 14373303
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||| || | |||| ||| |||||| || || | ||||| ||
Sbjct 14373304 TTCAAATCTCACAGCTGTCAAATTTTTGTTTTACTTTTTTTT 14373345
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/87 (83%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320
|| |||||| ||||||||||||||||||||||||| | ||| |||||| | || || |
Sbjct 27089484 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 27089425
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 27089424 GCGTGGGTTCAAATCCCACTTCTGACA 27089398
>seq12
Length=18681871
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 279145 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 279204
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| || ||||| ||||||
Sbjct 279205 TGGGTTCAAATCCCACTTCTGACA 279228
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 1926226 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1926285
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| || ||||| ||||||
Sbjct 1926286 TGGGTTCAAATCCCACTTCTGACA 1926309
>seq5
Length=25164199
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 512572 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 512515
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| ||| || ||
Sbjct 512514 GGGTTCAAATCCCACAGCTGTCAATTTTTT 512485
>seq1
Length=43445878
Score = 82.4 bits (90), Expect = 8e-11
Identities = 76/94 (81%), Gaps = 3/94 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 42942632 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 42942575
Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357
|||||| || |||||| ||| || |||| || ||
Sbjct 42942574 GGGTTCAAATCCCACAGCTGTCATAATTTTTCTT 42942541
Score = 82.4 bits (90), Expect = 8e-11
Identities = 76/94 (81%), Gaps = 3/94 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 42962535 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 42962478
Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357
|||||| || |||||| ||| || |||| || ||
Sbjct 42962477 GGGTTCAAATCCCACAGCTGTCATAATTTTTCTT 42962444
Score = 82.4 bits (90), Expect = 8e-11
Identities = 76/94 (81%), Gaps = 3/94 (3%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 42962973 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 42962916
Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357
|||||| || |||||| ||| || |||| || ||
Sbjct 42962915 GGGTTCAAATCCCACAGCTGTCATAATTTTTCTT 42962882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556793364157120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |