Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 1e-14 seq7 91.5 2e-13 seq3 89.7 6e-13 seq2 89.7 6e-13 seq4 87.8 2e-12 seq12 86.0 7e-12 seq5 84.2 2e-11 seq1 82.4 8e-11 >seq10 Length=17164355 Score = 95.1 bits (104), Expect = 1e-14 Identities = 80/96 (83%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 12340440 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTACCGAGGGC 12340499 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||| || ||||| ||||| ||||||| ||| Sbjct 12340500 GTGGGTTCAAATCCCACTTCTGAC-AATTATTTTTG 12340534 >seq7 Length=26479886 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 8054132 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 8054073 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| |||||| ||| || Sbjct 8054072 GTGGGTTCAAATCCCACTTCTGACAGATTTTT 8054041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/92 (82%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 21700769 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 21700826 Query 126328 TTCGAACCCCACACCTG--ACAAATTATTATT 126357 ||| || |||||| ||| |||||| ||| || Sbjct 21700827 TTCAAATCCCACAGCTGTCACAAATCATTTTT 21700858 >seq3 Length=46202548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 43597685 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 43597744 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| |||||| | | |||| | ||||| || Sbjct 43597745 TGGGTTCAAATCCCACTTCTGACATAATTTTATCGTCTTTTTTTTT 43597790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| || | ||| Sbjct 3845624 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCTTACGAGGGCG 3845565 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||| || ||||| ||||||| Sbjct 3845564 TGGGTTCAAATCCCACTTCTGACAA 3845540 >seq2 Length=36083738 Score = 89.7 bits (98), Expect = 6e-13 Identities = 86/107 (80%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 35233610 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 35233669 Query 126323 GTGGGTTCGAACCCCACACCTGACA--AATTATTAT-TGGAATTTTT 126366 |||||||| || ||||| |||||| |||| || | | | |||||| Sbjct 35233670 GTGGGTTCAAATCCCACTTCTGACATTAATTTTTTTCTTGCATTTTT 35233716 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/98 (81%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 19140772 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19140829 Query 126328 TTCGAACCCCACACCTGACAA-ATTATTATTGGAATTT 126364 ||| || |||||| ||| ||| ||||| || ||||| Sbjct 19140830 TTCAAATCCCACAGCTGTCAATTTTATTTTT--AATTT 19140865 >seq4 Length=32292456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 14373246 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 14373303 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || | |||| ||| |||||| || || | ||||| || Sbjct 14373304 TTCAAATCTCACAGCTGTCAAATTTTTGTTTTACTTTTTTTT 14373345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 27089484 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 27089425 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 27089424 GCGTGGGTTCAAATCCCACTTCTGACA 27089398 >seq12 Length=18681871 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 279145 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 279204 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 279205 TGGGTTCAAATCCCACTTCTGACA 279228 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1926226 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1926285 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1926286 TGGGTTCAAATCCCACTTCTGACA 1926309 >seq5 Length=25164199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 512572 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 512515 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 512514 GGGTTCAAATCCCACAGCTGTCAATTTTTT 512485 >seq1 Length=43445878 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 42942632 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 42942575 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 |||||| || |||||| ||| || |||| || || Sbjct 42942574 GGGTTCAAATCCCACAGCTGTCATAATTTTTCTT 42942541 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 42962535 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 42962478 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 |||||| || |||||| ||| || |||| || || Sbjct 42962477 GGGTTCAAATCCCACAGCTGTCATAATTTTTCTT 42962444 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 42962973 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 42962916 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 |||||| || |||||| ||| || |||| || || Sbjct 42962915 GGGTTCAAATCCCACAGCTGTCATAATTTTTCTT 42962882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556793364157120