Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 4e-20
seq5 104 2e-17
seq4 98.7 8e-16
seq2 93.3 4e-14
seq8 86.0 5e-12
>seq6
Length=30401905
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| ||| || || || ||| ||||| || || |||
Sbjct 27218331 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 27218272
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||||||||| |||||||| || ||||| || ||||| ||||| ||
Sbjct 27218271 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 27218212
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| | ||| || || || | ||| | || |||||||| || ||
Sbjct 27218211 ACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 27218152
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 27218151 TTCACAAAGATCTGCAT 27218135
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || ||||||||||| | || || ||| || ||||| || |||
Sbjct 26902597 GTGGACTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCA 26902538
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||||||||| || ||||| || |||||||| || ||||| |||||| ||
Sbjct 26902537 GCAAAGATGAGACGTTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGGCCTTC 26902478
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| || || | ||| || || || | ||| | || ||||| || || ||
Sbjct 26902477 ACATCGTCAATTGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTC 26902418
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 26902417 TTCACAAAGATCTGCAT 26902401
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| |||||||||||||| || || ||| || ||||| || || ||
Sbjct 26902825 GTGGACTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGACCGTCCTCAAGCTGCTTGCCG 26902766
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||||||||| ||||| ||||| || || || ||||| ||||| ||
Sbjct 26902765 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 26902706
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | ||||| | || ||||| || | || | || || || |||| ||
Sbjct 26902705 ACATTGTCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTC 26902646
Query 114366 TTTACAAAAATCTGCATGGCT 114386
|| ||||| ||||||||| ||
Sbjct 26902645 TTCACAAAGATCTGCATGCCT 26902625
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || |||||||||||||| || || || ||| || || || || ||
Sbjct 26903053 GTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGTCCATCCTCGAGCTGCTTGCCT 26902994
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| ||||| |||||||| ||||| || || ||||| ||||| ||
Sbjct 26902993 GCAAAGATGAGGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTC 26902934
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | || || | || || || || | || | || ||||||||||| ||
Sbjct 26902933 ACGTTGTCGATCGTATCAGAAGACTCAACCTCAAGCGTAATGGTCTTGCCGGTCAGGGTC 26902874
Query 114366 TTTACAAAAATCTGCATGGCT 114386
|| ||||||||||||||| ||
Sbjct 26902873 TTGACAAAAATCTGCATGCCT 26902853
Score = 86.0 bits (94), Expect = 5e-12
Identities = 96/126 (76%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACG 114223
|| |||| || ||||| | ||| || ||||| |||||||||||||| ||| || |||||
Sbjct 25234376 AGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGCTAAT-GTACG 25234318
Query 114224 AGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTC 114283
|||||| ||||| || || ||| | || || | || ||||| || ||||| || ||
Sbjct 25234317 TCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGGAATACCCTC 25234258
Query 114284 TTTGTC 114289
||||||
Sbjct 25234257 TTTGTC 25234252
>seq5
Length=25164199
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| ||||| || || |||||||| || | || || |||||| || || || |||
Sbjct 21088395 GTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCA 21088454
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||||||||| |||||||| || || || || ||||| ||||| |||
Sbjct 21088455 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTT 21088514
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||| || | ||| || || || | ||| | || ||||| || |||||
Sbjct 21088515 ACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTC 21088574
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 21088575 TTCACAAAGATCTGCAT 21088591
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || ||||||||||| ||| | || || |||||| || || || ||
Sbjct 21087483 GTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 21087542
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| |||| || ||||| ||||| || ||||| ||||| || || ||||| ||
Sbjct 21087543 GCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTTC 21087602
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||||| | || || |||| || | || ||||| || |||||
Sbjct 21087603 ACATTGTCGATGGTGTCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTC 21087662
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 21087663 TTGACAAAGATCTGCAT 21087679
>seq4
Length=32292456
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || ||||| ||||| | |||||| ||| ||||| || || |||
Sbjct 28749501 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 28749442
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| |||| || ||||| ||||||||||| ||||| || || || |||||| ||
Sbjct 28749441 GCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGAATCTTAGCCTTC 28749382
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| || |||| ||| || || |||| ||| | || ||||| || || ||
Sbjct 28749381 ACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTC 28749322
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 28749321 TTAACGAATATCTGCAT 28749305
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|||||||| || || | || || | || | || ||||| ||||| |||||||| ||
Sbjct 28749762 ATACCGCCCCGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCT 28749703
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || ||| || || || || ||||| ||||||||||||| ||||| ||
Sbjct 28749702 GCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGT 28749643
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||||| || | | || | ||||| | || |||
Sbjct 28749642 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATCGTGTCAGACGACTCG 28749583
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386
|| |||| ||| | || |||||||| || || || || || || |||||| ||
Sbjct 28749582 ACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAATATTTGCATGCCT 28749529
>seq2
Length=36083738
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || || | ||| | || ||| | ||| | || || || || || |||||||| |||
Sbjct 2262744 ATTCCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2262803
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || | ||| || || || || ||||| ||||||| ||||| ||||| ||
Sbjct 2262804 GCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGG 2262863
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | || | |||||| | || ||
Sbjct 2262864 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCC 2262923
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| || | ||| | || |||||||||||||| || || || |||||||||
Sbjct 2262924 ACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATG 2262974
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286
||| || || || || ||||| ||||||||||||| |||||||| |||||||| || ||
Sbjct 2263046 ATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 2263105
Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346
||| ||||| || | | || | |||||| | ||| || || || | ||| |
Sbjct 2263106 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGAT 2263165
Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||||||||| || || ||||| ||||||||
Sbjct 2263166 AGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 2263201
>seq8
Length=23026653
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || ||||||||||| || | || ||| || || || || || ||
Sbjct 4139844 GTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGACCTTCCTCGAGCTGCTTGCCG 4139903
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||| ||||| ||||| ||||| || || || ||||| ||||| ||
Sbjct 4139904 GCGAAGATGAGGCGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 4139963
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| | ||| || || || | ||| | | ||||||||||| ||
Sbjct 4139964 ACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTC 4140023
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 4140024 TTCACAAAGATCTGCAT 4140040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420084793681056
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