Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq6 414 2e-110
>seq6
Length=30401905
Score = 414 bits (458), Expect = 2e-110
Identities = 540/735 (73%), Gaps = 29/735 (4%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA-CCTGGCCACCAGGTTCAT 42481
|| ||||||||||||||||| || ||||| || ||||| ||| ||| ||||||||||
Sbjct 11442422 CTCGCCTTCTTCGCCGCCTCCGATGGCATCGTGCTCGAGAAACCTCGCCTCCAGGTTCAT 11442481
Query 42482 GAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541
| || |||||| | |||| |||| ||||||||| |||||||| ||||| |||||
Sbjct 11442482 GTCCGACGTGCAGGTCGCCGAGGGGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAA 11442541
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601
| | ||||| ||| ||||| | |||||| | || ||||||| || || ||||
Sbjct 11442542 CATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAA 11442601
Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGG 42660
|| |||||||| ||||| || || | ||| || | | ||||| |||||||
Sbjct 11442602 GGACAGGCTGTTCCGCGCCATCGACACCGT-CCCGGCCGTGCGCCGCAAGGCCGACTGGG 11442660
Query 42661 CGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719
| | ||||||||| | ||| ||| |||| |||| | || || ||||| ||
Sbjct 11442661 CCATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCC 11442716
Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779
||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || |
Sbjct 11442717 TGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGG 11442776
Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839
| | ||||| || ||||||||||| ||||| |||||| | | |||||||| |||||
Sbjct 11442777 GGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCAC 11442836
Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGC 42897
| ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| ||
Sbjct 11442837 TGCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGCGC 11442891
Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957
| ||||| | ||| || | || ||||| || ||||||| ||||||| || | |||
Sbjct 11442892 GCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGC 11442951
Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017
| ||||| | || |||||||||||| |||||||||| || |||||||| ||| |||||
Sbjct 11442952 TCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCG 11443011
Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTACAAC-ACGCCGTGC 43070
|||||| ||||| |||| ||| || || | |||||| |||| |
Sbjct 11443012 CCGACCGCCTCCT------CATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCC-AAC 11443064
Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130
|||||||||| |||||| |||||| || |||||||||||||||| ||||||||||||
Sbjct 11443065 CCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGC 11443124
Query 43131 GTCGCCGACTACCAG 43145
|||| ||||||||||
Sbjct 11443125 GTCGGCGACTACCAG 11443139
Score = 394 bits (436), Expect = 2e-104
Identities = 533/729 (73%), Gaps = 18/729 (2%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||| ||||| || ||||| || |||||||| ||| |||||||||||
Sbjct 1930100 CTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 1930041
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| |||||| | ||||||||| ||||||||| |||||||| ||||| ||||||
Sbjct 1930040 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAAC 1929981
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||| ||| ||||| | |||||| | |||||||||| || |||||||
Sbjct 1929980 ATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG 1929921
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
|| | || ||| ||||| || || | ||| | | ||||| ||||||||
Sbjct 1929920 GACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 1929861
Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
| |||||||| | ||| ||| |||| |||| |||| || ||||| ||
Sbjct 1929860 ATGCGATGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGGCTCGTCGCCTTCGCCTG 1929805
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780
||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || ||
Sbjct 1929804 CGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 1929745
Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840
|| ||||| || ||||||||||| ||||| |||||| | | |||||||| || ||
Sbjct 1929744 ACTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACT 1929686
Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898
| ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| ||
Sbjct 1929685 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGCACG 1929631
Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958
|||| || ||| || | || |||||||| ||||||| ||||||| || | ||||
Sbjct 1929630 CGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 1929571
Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018
||||| | || ||||| |||||| ||| |||||| || |||||||| ||| ||||||
Sbjct 1929570 CCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGC 1929511
Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076
||||| || || || | |||| || | | |||||| |||| ||| |||
Sbjct 1929510 CGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAG-ATGTACAACGTCGCC-AACCCGTTC 1929453
Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136
|||| |||||| |||||| || |||||||||||||||| |||||||||||||||| |
Sbjct 1929452 GACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 1929393
Query 43137 GACTACCAG 43145
|||||||||
Sbjct 1929392 GACTACCAG 1929384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944224840522880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |