Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 414 2e-110 >seq6 Length=30401905 Score = 414 bits (458), Expect = 2e-110 Identities = 540/735 (73%), Gaps = 29/735 (4%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA-CCTGGCCACCAGGTTCAT 42481 || ||||||||||||||||| || ||||| || ||||| ||| ||| |||||||||| Sbjct 11442422 CTCGCCTTCTTCGCCGCCTCCGATGGCATCGTGCTCGAGAAACCTCGCCTCCAGGTTCAT 11442481 Query 42482 GAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 | || |||||| | |||| |||| ||||||||| |||||||| ||||| ||||| Sbjct 11442482 GTCCGACGTGCAGGTCGCCGAGGGGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAA 11442541 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | ||||| ||| ||||| | |||||| | || ||||||| || || |||| Sbjct 11442542 CATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAA 11442601 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGG 42660 || |||||||| ||||| || || | ||| || | | ||||| ||||||| Sbjct 11442602 GGACAGGCTGTTCCGCGCCATCGACACCGT-CCCGGCCGTGCGCCGCAAGGCCGACTGGG 11442660 Query 42661 CGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 | | ||||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 11442661 CCATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCC 11442716 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 ||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || | Sbjct 11442717 TGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGG 11442776 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | | ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| Sbjct 11442777 GGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCAC 11442836 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGC 42897 | ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| || Sbjct 11442837 TGCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGCGC 11442891 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 | ||||| | ||| || | || ||||| || ||||||| ||||||| || | ||| Sbjct 11442892 GCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGC 11442951 Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 | ||||| | || |||||||||||| |||||||||| || |||||||| ||| ||||| Sbjct 11442952 TCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCG 11443011 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTACAAC-ACGCCGTGC 43070 |||||| ||||| |||| ||| || || | |||||| |||| | Sbjct 11443012 CCGACCGCCTCCT------CATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCC-AAC 11443064 Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 |||||||||| |||||| |||||| || |||||||||||||||| |||||||||||| Sbjct 11443065 CCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGC 11443124 Query 43131 GTCGCCGACTACCAG 43145 |||| |||||||||| Sbjct 11443125 GTCGGCGACTACCAG 11443139 Score = 394 bits (436), Expect = 2e-104 Identities = 533/729 (73%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| || ||||| || |||||||| ||| ||||||||||| Sbjct 1930100 CTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 1930041 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| ||||||||| |||||||| ||||| |||||| Sbjct 1930040 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAAC 1929981 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | |||||||||| || ||||||| Sbjct 1929980 ATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG 1929921 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 1929920 GACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 1929861 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||| | ||| ||| |||| |||| |||| || ||||| || Sbjct 1929860 ATGCGATGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGGCTCGTCGCCTTCGCCTG 1929805 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 1929804 CGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 1929745 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 1929744 ACTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACT 1929686 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| || Sbjct 1929685 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGCACG 1929631 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 |||| || ||| || | || |||||||| ||||||| ||||||| || | |||| Sbjct 1929630 CGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 1929571 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || ||||| |||||| ||| |||||| || |||||||| ||| |||||| Sbjct 1929570 CCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGC 1929511 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076 ||||| || || || | |||| || | | |||||| |||| ||| ||| Sbjct 1929510 CGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAG-ATGTACAACGTCGCC-AACCCGTTC 1929453 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| |||||| || |||||||||||||||| |||||||||||||||| | Sbjct 1929452 GACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 1929393 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 1929392 GACTACCAG 1929384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944224840522880