Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq6 91.5 1e-13
seq9 87.8 1e-12
seq3 86.0 5e-12
seq263 84.2 2e-11
seq5 84.2 2e-11
seq2 84.2 2e-11
seq1 84.2 2e-11
>seq6
Length=30401905
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||||| ||||| || ||||| ||| ||| ||||||||||||||||| |||
Sbjct 26902855 CCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCC 26902796
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| || |||| || | |||||||||||||| || || |||||||| ||
Sbjct 26902795 AGGGTCCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTC 26902743
>seq9
Length=22605696
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || || |||| || ||||| ||||| || |||||||||||||||||| || |||
Sbjct 12264474 CCACCCCTTAGCCTGAGGACCAGGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCC 12264415
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| | ||| | || |||| ||||||||||| ||||||| ||||| |||||
Sbjct 12264414 AGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATC 12264362
>seq3
Length=46202548
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || |||||||| ||||||||| ||||||||| |||||||| || |||| ||
Sbjct 11348833 AGGCGAAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 11348774
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| || |||| ||||| ||||| || || ||||||||||| ||| ||||
Sbjct 11348773 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGCCGG 11348724
>seq263
Length=627
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || || || || |||||||| || || ||| |||||||||||||||||| || ||
Sbjct 127 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 68
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| || | || |||| ||||||||||| || |||||||||||||| ||
Sbjct 67 GAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 14
>seq5
Length=25164199
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || || || || |||||||| || || ||| |||||||||||||||||| || ||
Sbjct 21087452 ACCACCCCTAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 21087511
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| || | || |||| ||||||||||| || |||||||||||||| ||
Sbjct 21087512 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 21087565
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| || || || || || || ||||| ||| ||||||||| |||||||| || ||
Sbjct 21088137 CCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 21088195
Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
|| ||| || | || || | |||||||| ||||| ||||| |||||||| ||| |
Sbjct 21088196 AAGGGTC-CTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGG 21088254
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078
| | | ||| |||||| || ||| ||||| | | |||||| ||| ||
Sbjct 21088255 GAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATGGTATCAGAAGACTCAA 21088314
Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | || || || || || || | || || ||||||||||||||
Sbjct 21088315 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 21088363
>seq2
Length=36083738
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/137 (75%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || || || ||||| || |||||||| ||| ||||||||| |||||||| || ||
Sbjct 2262747 CCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC- 2262805
Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
|| ||| || | || |||| |||||||| ||||| || ||||||||||| || |
Sbjct 2262806 AAGGGTC-CTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGG 2262864
Query 34019 GCACGCTCTCTTTGTCC 34035
| | || ||| ||||||
Sbjct 2262865 GAATGCCCTCCTTGTCC 2262881
>seq1
Length=43445878
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || |||||||| || ||||| ||||||||| |||||||| || |||| ||
Sbjct 21648085 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 21648144
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| |||| ||||||||||| || || || |||||||| ||| ||| | | |||
Sbjct 21648145 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 21648204
Query 34030 TTGTCC 34035
||||||
Sbjct 21648205 TTGTCC 21648210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397015517849776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |