Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq6 154 3e-32
>seq6
Length=30401905
Score = 154 bits (170), Expect = 3e-32
Identities = 307/452 (68%), Gaps = 6/452 (1%)
Strand=Plus/Plus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
|| || ||||| |||||||||| | ||||| || || || | || || || |||
Sbjct 11442690 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 11442749
Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408
||||||||||| ||||| ||| || | ||||| |||||| | || ||||||
Sbjct 11442750 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 11442809
Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468
||||| |||||||||||||| ||| | |||| || | || |||
Sbjct 11442810 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 11442869
Query 243469 CAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525
| |||||| | | ||| || ||| | ||| || | || || || || | |
Sbjct 11442870 CGCGGCAAGCT-CGA--CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 11442926
Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585
|| | ||| ||| | |||||||| | || | ||| | ||||||||| || |||
Sbjct 11442927 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTC 11442986
Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645
||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | ||||
Sbjct 11442987 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAAG 11443046
Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705
|||||||| | |||||||| | || ||||||||||| || || || || || ||
Sbjct 11443047 ATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 11443106
Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||||||||||| ||||| ||| | || || ||
Sbjct 11443107 AACTTCTTCGAGAAGCGCGTCGGCGACTACCA 11443138
Score = 147 bits (162), Expect = 5e-30
Identities = 304/450 (68%), Gaps = 2/450 (0%)
Strand=Plus/Minus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
|| || ||||| |||||||||| | ||||| || || || | || || || |||
Sbjct 1929833 TTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 1929774
Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408
||||||||||| ||||| ||| || | ||||| |||||| | || ||||||
Sbjct 1929773 TGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAG 1929714
Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468
||||| |||||||||||||| ||| | |||| || | || |||
Sbjct 1929713 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 1929654
Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527
| |||||| | | | ||| ||| | | ||| || | || || || || | |||
Sbjct 1929653 CGCGGCAAGCT-CGACGAGGCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGA 1929595
Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587
| ||| ||| | |||||||| | || | ||| | || |||||| || |||||
Sbjct 1929594 GAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCAT 1929535
Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647
| | ||||||||||| ||||| |||||||| | |||| ||||| || | |||| |
Sbjct 1929534 GAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAGAT 1929475
Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707
||||||| | ||||| || | || ||||||||||| || || || || || || ||
Sbjct 1929474 GTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAA 1929415
Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||||||||| ||||| ||| | || || ||
Sbjct 1929414 CTTCTTCGAGAAGCGCGTCGGCGACTACCA 1929385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102743102262800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |