Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 168 8e-37 >seq6 Length=30401905 Score = 168 bits (186), Expect = 8e-37 Identities = 320/458 (70%), Gaps = 20/458 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 1929387 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1929446 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| ||||| | | |||| Sbjct 1929447 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 1929501 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 1929502 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1929561 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || |||||||| || ||||| Sbjct 1929562 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 1929620 Query 125992 GGCGTGAATG-GTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGG 126047 | || | | ||| | | || | | ||| | | ||| | || ||| || || Sbjct 1929621 CTCCTGGACGCGTGCCTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GG 1929676 Query 126048 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTG 126107 | || || |||||| |||||||| ||||||||||| || || |||||| || || | Sbjct 1929677 CGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 1929736 Query 126108 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTC 126167 ||||||| || |||||||| | |||||| || || || || || |||||||||||||| | Sbjct 1929737 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCC 1929796 Query 126168 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 |||| || || ||||| || | ||| ||||| || ||| Sbjct 1929797 CCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1929834 Score = 156 bits (172), Expect = 5e-33 Identities = 315/457 (69%), Gaps = 18/457 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 11443136 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 11443077 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 | || || ||||| | ||| | || || ||| || || | | ||||| Sbjct 11443076 CCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGG 11443022 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 125931 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 11443021 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 11442962 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | || ||||||||||| ||| |||| || |||| || || ||||| || ||||| Sbjct 11442961 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 11442903 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGC 126048 || | | | || | | | | ||| | | ||| | || ||| || ||| Sbjct 11442902 CTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 11442846 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||| || |||||||| ||||||||||| || || |||||| || || || Sbjct 11442845 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 11442786 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 |||||| ||||||||||| | |||||| || || || || || |||||||||||||| || Sbjct 11442785 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 11442726 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| || || ||||| || | ||| ||||| || ||| Sbjct 11442725 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 11442689 Score = 127 bits (140), Expect = 2e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || | || || || || || || ||| || | |||| Sbjct 30123161 ACGGTGACCTGCCGATCGAACCTCCCAGGCCGAAGAAGCGCCGAGTCGAGCACATCAGGC 30123102 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| ||||| |||| |||| || || | | |||| ||||||||||||||| Sbjct 30123101 CTGTTTGTCGCGGCGAGCACAATGACACCACTGTTCCCGGCAAATCCATCCATCTCAGTC 30123042 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 10953 ||||| || |||||||| || || | |||||| ||| | | | | || |||| || Sbjct 30123041 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 30122983 Query 10954 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGC 11013 ||| | |||||||| ||||| ||||| ||||| ||||| || || || | ||| Sbjct 30122982 CTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 30122923 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 || || | || | ||| || ||| |||||||| || |||| || || || | Sbjct 30122922 CTTCTCGAACAGGTCCCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTC 30122863 Query 11074 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 11133 || |||| ||| || |||||| || || || || |||| ||| || || || || Sbjct 30122862 GGACGCGGCACAGGAGAAGAAGGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 30122803 Query 11134 GGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 11190 |||||||| ||||| || || |||| | |||| | | | |||||| |||| || Sbjct 30122802 TGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 30122746 Score = 104 bits (114), Expect = 3e-17 Identities = 229/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 8589 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 8648 |||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 3164116 CCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 3164175 Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 || ||||| || |||| || ||||| || ||| ||| | ||||||||||||||||| Sbjct 3164176 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAGTCC 3164235 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATC--- 8765 || || || ||| | | ||||| || ||||||||| | || | |||| Sbjct 3164236 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 3164295 Query 8766 GTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 8825 |||| ||| || || | | || |||||| ||||| |||||||||||| Sbjct 3164296 GTCGGCCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 3164352 Query 8826 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGAA 8885 |||| |||||| || || || ||||||| | | || || || || || | | ||| Sbjct 3164353 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 3164412 Query 8886 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 8927 || |||||||| || | |||| | ||| ||||| ||||||| Sbjct 3164413 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 3164454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597281260479040