Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq6 86.0 6e-12
>seq6
Length=30401905
Score = 86.0 bits (94), Expect = 6e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 45122 GAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTT 45181
|||||| | ||| || || || || || ||||| ||||| || || ||| | |||
Sbjct 27218353 GAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCG 27218294
Query 45182 AGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTC 45241
||| || | || || || ||| | || | || ||||||||||| || ||||| ||
Sbjct 27218293 GCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTC 27218234
Query 45242 TTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301
|| || || || || |||| || | |||||| || ||||| || ||||| ||
Sbjct 27218233 CTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGT 27218174
Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| || |||||||| || || || ||||| || ||||||
Sbjct 27218173 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 27218134
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| | ||| | | || || || || || || ||||| ||||| || |||||
Sbjct 26902630 ATGCCTCCCCTGAGGCGTAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 26902571
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| ||| ||| || | ||| || || || | || | ||||||||||| ||
Sbjct 26902570 GCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGT 26902511
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || |||||||| || || | | || | || || || |||||
Sbjct 26902510 GGAATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCGTCAATTGTATCAGAGGACTCA 26902451
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || | || ||||| || || || || ||||| || ||||||
Sbjct 26902450 ACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATC 26902400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451948462412480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |