Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq6 168 8e-37
>seq6
Length=30401905
Score = 168 bits (186), Expect = 8e-37
Identities = 320/458 (70%), Gaps = 20/458 (4%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| ||||| ||||||||||||||||| ||||| || | ||| ||| ||||||
Sbjct 1929387 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1929446
Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345
| || || ||||| | ||| | || || ||| ||||| | | ||||
Sbjct 1929447 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 1929501
Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404
|| || || | |||| |||| ||||||| ||| ||| |||||| |||| |||
Sbjct 1929502 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1929561
Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464
| || ||||||||||| ||| |||| || |||| |||||||| || || |||||
Sbjct 1929562 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 1929620
Query 127465 GGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAG 127520
| || | ||| | | || | | ||| | | ||| | || ||| || |
Sbjct 1929621 CTCCTGGACGCGTGCCTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-G 1929676
Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580
| || || |||||| |||||||| ||||||||||| || || |||||| || || |
Sbjct 1929677 CGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 1929736
Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640
||||||| || |||||||| | |||||| || || || || ||||| |||||||||||||
Sbjct 1929737 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCC 1929796
Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678
|||| || || ||||| || | || |||||||| |||
Sbjct 1929797 CCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1929834
Score = 156 bits (172), Expect = 5e-33
Identities = 315/457 (69%), Gaps = 18/457 (4%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| ||||| ||||||||||||||||| ||||| || | ||| ||| ||||||
Sbjct 11443136 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 11443077
Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345
| || || ||||| | ||| | || || ||| || || | | |||||
Sbjct 11443076 CCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGG 11443022
Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404
|| || || | |||| |||| ||||||| ||| || |||||| |||| |||
Sbjct 11443021 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 11442962
Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464
| || ||||||||||| ||| |||| || |||| ||||| || || || |||||
Sbjct 11442961 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 11442903
Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGC 127521
|| | | || | | | | ||| | | ||| | || ||| || ||
Sbjct 11442902 CTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-GC 11442846
Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581
|| || ||| || |||||||| ||||||||||| || || |||||| || || ||
Sbjct 11442845 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 11442786
Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641
|||||| ||||||||||| | |||||| || || || || ||||| ||||||||||||||
Sbjct 11442785 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 11442726
Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678
||| || || ||||| || | || |||||||| |||
Sbjct 11442725 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 11442689
Score = 123 bits (136), Expect = 3e-23
Identities = 284/421 (67%), Gaps = 10/421 (2%)
Strand=Plus/Minus
Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749
||||||| || ||||| || | || || || || || || ||| || | ||||
Sbjct 30123161 ACGGTGACCTGCCGATCGAACCTCCCAGGCCGAAGAAGCGCCGAGTCGAGCACATCAGGC 30123102
Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806
| ||| ||||| |||| |||| || || | ||| || || ||||||||||||
Sbjct 30123101 CTGTTTGTCGCGGCGAGCACAATGACACCACT---GTTCCCGGCAAATCCATCCATCTCA 30123045
Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGGCATACCACCCGCACT 12865
|||||||| || |||||||| || || | |||||| ||| | | | | || ||||
Sbjct 30123044 GTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACC 30122986
Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925
|| ||| | |||||||| ||||| || |||||||| ||||| || || || |
Sbjct 30122985 ACGCTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTT 30122926
Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985
||| || || | || | || || ||| |||||||| || |||| ||| || ||
Sbjct 30122925 GGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAA 30122866
Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045
| || |||| ||| || |||||| || || || || |||| ||| || || ||
Sbjct 30122865 CTCGGACGCGGCACAGGAGAAGAAGGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAG 30122806
Query 13046 GAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 13104
|| |||||||| ||||| || || |||| | |||| | | | |||||| |||| |
Sbjct 30122805 CAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCC 30122747
Query 13105 C 13105
|
Sbjct 30122746 C 30122746
Score = 100 bits (110), Expect = 3e-16
Identities = 228/342 (67%), Gaps = 6/342 (2%)
Strand=Plus/Plus
Query 10504 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 10563
|||||| | || || ||| ||| | || | | ||||| || || || ||| |
Sbjct 3164116 CCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 3164175
Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623
|| || ||||| |||| || ||||| | ||| ||| | |||||||||||||||||
Sbjct 3164176 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAGTCC 3164235
Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 10683
|| || || ||| | | ||||| || ||||||||| | || | |||| |
Sbjct 3164236 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 3164295
Query 10684 GCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 10740
| || ||| || || | | || |||||| ||||| ||||||||||||
Sbjct 3164296 GTCGGCCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 3164352
Query 10741 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAA 10800
|||| |||||| || || || ||||||| | | || || || || || | | |||
Sbjct 3164353 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 3164412
Query 10801 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842
|| |||||||| || | |||| | ||| ||||| |||||||
Sbjct 3164413 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 3164454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613432904278080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |