Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 168 8e-37 >seq6 Length=30401905 Score = 168 bits (186), Expect = 8e-37 Identities = 320/458 (70%), Gaps = 20/458 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 1929387 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1929446 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| ||||| | | |||| Sbjct 1929447 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 1929501 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 1929502 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1929561 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| |||||||| || || ||||| Sbjct 1929562 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 1929620 Query 127465 GGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAG 127520 | || | ||| | | || | | ||| | | ||| | || ||| || | Sbjct 1929621 CTCCTGGACGCGTGCCTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-G 1929676 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || |||||| |||||||| ||||||||||| || || |||||| || || | Sbjct 1929677 CGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 1929736 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 ||||||| || |||||||| | |||||| || || || || ||||| ||||||||||||| Sbjct 1929737 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCC 1929796 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||| || || ||||| || | || |||||||| ||| Sbjct 1929797 CCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1929834 Score = 156 bits (172), Expect = 5e-33 Identities = 315/457 (69%), Gaps = 18/457 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 11443136 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 11443077 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| || || | | ||||| Sbjct 11443076 CCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGG 11443022 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 11443021 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 11442962 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| ||||| || || || ||||| Sbjct 11442961 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 11442903 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGC 127521 || | | || | | | | ||| | | ||| | || ||| || || Sbjct 11442902 CTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-GC 11442846 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| || |||||||| ||||||||||| || || |||||| || || || Sbjct 11442845 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 11442786 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| ||||||||||| | |||||| || || || || ||||| |||||||||||||| Sbjct 11442785 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCC 11442726 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| || || ||||| || | || |||||||| ||| Sbjct 11442725 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 11442689 Score = 123 bits (136), Expect = 3e-23 Identities = 284/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | || || || || || || ||| || | |||| Sbjct 30123161 ACGGTGACCTGCCGATCGAACCTCCCAGGCCGAAGAAGCGCCGAGTCGAGCACATCAGGC 30123102 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCA 12806 | ||| ||||| |||| |||| || || | ||| || || |||||||||||| Sbjct 30123101 CTGTTTGTCGCGGCGAGCACAATGACACCACT---GTTCCCGGCAAATCCATCCATCTCA 30123045 Query 12807 GTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGGCATACCACCCGCACT 12865 |||||||| || |||||||| || || | |||||| ||| | | | | || |||| Sbjct 30123044 GTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACC 30122986 Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925 || ||| | |||||||| ||||| || |||||||| ||||| || || || | Sbjct 30122985 ACGCTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTT 30122926 Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || || | || | || || ||| |||||||| || |||| ||| || || Sbjct 30122925 GGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAA 30122866 Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | || |||| ||| || |||||| || || || || |||| ||| || || || Sbjct 30122865 CTCGGACGCGGCACAGGAGAAGAAGGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAG 30122806 Query 13046 GAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCAC 13104 || |||||||| ||||| || || |||| | |||| | | | |||||| |||| | Sbjct 30122805 CAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCC 30122747 Query 13105 C 13105 | Sbjct 30122746 C 30122746 Score = 100 bits (110), Expect = 3e-16 Identities = 228/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 10504 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 10563 |||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 3164116 CCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 3164175 Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623 || || ||||| |||| || ||||| | ||| ||| | ||||||||||||||||| Sbjct 3164176 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAGTCC 3164235 Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 10683 || || || ||| | | ||||| || ||||||||| | || | |||| | Sbjct 3164236 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 3164295 Query 10684 GCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 10740 | || ||| || || | | || |||||| ||||| |||||||||||| Sbjct 3164296 GTCGGCCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 3164352 Query 10741 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAA 10800 |||| |||||| || || || ||||||| | | || || || || || | | ||| Sbjct 3164353 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 3164412 Query 10801 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 || |||||||| || | |||| | ||| ||||| ||||||| Sbjct 3164413 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 3164454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613432904278080