Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq6 215 8e-51
>seq6
Length=30401905
Score = 215 bits (238), Expect = 8e-51
Identities = 494/738 (67%), Gaps = 18/738 (2%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||||| || ||| || ||||| | |||| |||||
Sbjct 1929402 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 1929461
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
|||| || |||| | ||||| ||| |||| || ||| || || || ||
Sbjct 1929462 GGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCGGTCGGCGACGAACTC 1929521
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | ||| |||| | ||| ||||| | ||| ||||||||||| || |
Sbjct 1929522 GATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGACGGGGAGCGCGTCGCA 1929581
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888
| |||||| |||| || || || || |||| || |||| | ||| ||| | | |
Sbjct 1929582 GACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCTGGACGCGTGCCTCGTC 1929641
Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948
||||||| | | |||| | | |||||||| || ||||||||||| || |||||
Sbjct 1929642 GAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTC 1929698
Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008
||| || ||||||| ||||||||| | | ||||||||||||||| || ||| |||||
Sbjct 1929699 GTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCGCGCTTCTTGAG 1929758
Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067
||| || |||| |||| ||| | | | | || ||||||||||| ||| || || || |
Sbjct 1929759 CCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCGA 1929817
Query 160068 CGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126
|||||| ||| | || ||| | | | | | | |||| | ||||||| || |||
Sbjct 1929818 CGAGCCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCATCGCATGGCCCAGTCGGCC 1929873
Query 160127 TTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182
||||| ||||||| | | |||| |||| || | | ||||| |||
Sbjct 1929874 ----TTGCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGAC 1929929
Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242
| || ||| || | | |||| ||||||||| || | ||| | || |||||
Sbjct 1929930 GTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGAT 1929989
Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302
||| ||||| || |||||| |||||| |||||| || |||||||
Sbjct 1929990 GGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGCGACCTGCACGTCGGACATGAACCT 1930049
Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362
| || || | || | || |||| |||||| ||||| || | |||||| ||
Sbjct 1930050 GGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGCCGCGAAGAAGGCGAGCACGTGGGA 1930109
Query 160363 GATGAAATGTCTCTCGTC 160380
|| ||| || | ||||||
Sbjct 1930110 GACGAAGTGGCGCTCGTC 1930127
Score = 203 bits (224), Expect = 5e-47
Identities = 423/622 (68%), Gaps = 20/622 (3%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||||| || ||| || ||||| | |||| |||||
Sbjct 11443121 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 11443062
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
|||| || |||| | ||||| ||| || | | ||| || || || ||
Sbjct 11443061 GGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCGGTCGGCGACGAACTC 11443002
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | ||| | || | ||| || || | ||| ||||||||||| || |
Sbjct 11443001 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 11442942
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887
| |||||| |||| || ||||| || |||| || |||| ||| ||| || | |
Sbjct 11442941 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGCGCCTCGT 11442883
Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947
| ||||||| | | |||| | | |||||||| || |||||||||||||| ||||
Sbjct 11442882 CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 11442826
Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007
|||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| ||||
Sbjct 11442825 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGA 11442766
Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066
|||| || |||| |||| ||| | | | | || ||||||||||| ||| || || ||
Sbjct 11442765 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCG 11442707
Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125
||||| | ||| | || ||| | | | | | | |||| | ||||||| || ||
Sbjct 11442706 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCAGTCGGC 11442651
Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181
| ||||| ||||||| | | |||| |||| |||| ||||||| |||
Sbjct 11442650 C----TTGCGGCGCACGGCCGGGACGGTGTCGATGGCGCGGAACAGCCTGTCCTTCTCGG 11442595
Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241
| || ||| || | | |||| ||||||||| || | ||| | || ||||
Sbjct 11442594 CGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCGGAGTGGATGTTCTCGA 11442535
Query 160242 TGGCCATCTGAAAGTTGTAGAA 160263
|||| ||||| || ||||||
Sbjct 11442534 TGGCGATCTGGAACCCGTAGAA 11442513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795058906705280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |