Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 215 8e-51 >seq6 Length=30401905 Score = 215 bits (238), Expect = 8e-51 Identities = 494/738 (67%), Gaps = 18/738 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 1929402 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 1929461 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| |||| || ||| || || || || Sbjct 1929462 GGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCGGTCGGCGACGAACTC 1929521 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| |||| | ||| ||||| | ||| ||||||||||| || | Sbjct 1929522 GATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGACGGGGAGCGCGTCGCA 1929581 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 | |||||| |||| || || || || |||| || |||| | ||| ||| | | | Sbjct 1929582 GACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCTGGACGCGTGCCTCGTC 1929641 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 ||||||| | | |||| | | |||||||| || ||||||||||| || ||||| Sbjct 1929642 GAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTC 1929698 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 ||| || ||||||| ||||||||| | | ||||||||||||||| || ||| ||||| Sbjct 1929699 GTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCGCGCTTCTTGAG 1929758 Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||| || |||| |||| ||| | | | | || ||||||||||| ||| || || || | Sbjct 1929759 CCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCGA 1929817 Query 160068 CGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 |||||| ||| | || ||| | | | | | | |||| | ||||||| || ||| Sbjct 1929818 CGAGCCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCATCGCATGGCCCAGTCGGCC 1929873 Query 160127 TTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 ||||| ||||||| | | |||| |||| || | | ||||| ||| Sbjct 1929874 ----TTGCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGAC 1929929 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 | || ||| || | | |||| ||||||||| || | ||| | || ||||| Sbjct 1929930 GTCGTCGCGGATGTACGTCTCGAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGAT 1929989 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| || |||||| |||||| |||||| || ||||||| Sbjct 1929990 GGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGCGACCTGCACGTCGGACATGAACCT 1930049 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | || || | || | || |||| |||||| ||||| || | |||||| || Sbjct 1930050 GGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGCCGCGAAGAAGGCGAGCACGTGGGA 1930109 Query 160363 GATGAAATGTCTCTCGTC 160380 || ||| || | |||||| Sbjct 1930110 GACGAAGTGGCGCTCGTC 1930127 Score = 203 bits (224), Expect = 5e-47 Identities = 423/622 (68%), Gaps = 20/622 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 11443121 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 11443062 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| || | | ||| || || || || Sbjct 11443061 GGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCGGTCGGCGACGAACTC 11443002 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||||| || | Sbjct 11443001 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 11442942 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| |||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 11442941 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGCGCCTCGT 11442883 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | |||| | | |||||||| || |||||||||||||| |||| Sbjct 11442882 CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 11442826 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| |||| Sbjct 11442825 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGA 11442766 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||||||||| ||| || || || Sbjct 11442765 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCG 11442707 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | | |||| | ||||||| || || Sbjct 11442706 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCAGTCGGC 11442651 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| ||||||| | | |||| |||| |||| ||||||| ||| Sbjct 11442650 C----TTGCGGCGCACGGCCGGGACGGTGTCGATGGCGCGGAACAGCCTGTCCTTCTCGG 11442595 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 11442594 CGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCGGAGTGGATGTTCTCGA 11442535 Query 160242 TGGCCATCTGAAAGTTGTAGAA 160263 |||| ||||| || |||||| Sbjct 11442534 TGGCGATCTGGAACCCGTAGAA 11442513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795058906705280