Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 131 7e-25 seq4 93.3 2e-13 seq5 91.5 6e-13 >seq3 Length=46202548 Score = 131 bits (144), Expect = 7e-25 Identities = 248/365 (68%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 |||||||||||||| |||||||||| || ||| || | || ||| || | || Sbjct 43849271 GAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCTGAAGCTTACCTAGGA 43849330 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || | || | |||| || | |||||||| ||||| ||||||||| | || |||| Sbjct 43849331 TCAACTGTGAAGAATGCTGTTGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGCAG 43849390 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 |||||||||||||| || |||||| ||| | |||||| | || || || ||||| || Sbjct 43849391 GCAACTAAAGATGCCGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCA 43849450 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaaaa 451480 ||||| ||||| | || ||||| || | || || | || | || || Sbjct 43849451 ACAGCTGCTGCAATTGCTTATGGTCTTGACAA---GAAGGCGACTAGTGTTGGTGAGAAG 43849507 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || | | | ||||| ||||||| || ||| |||| || | ||| ||||||| Sbjct 43849508 AACGTGCTCATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCCCTCCTTACAATTGAG 43849567 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || || | ||||| || || ||||| |||||| ||||| || || || || || || Sbjct 43849568 GAGGGTATTTTTGAGGTGAAAGCAACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTT 43849627 Query 451601 GATAA 451605 || || Sbjct 43849628 GACAA 43849632 Score = 93.3 bits (102), Expect = 2e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||||||||| ||||||||||||||||| || || || || || || ||||| Sbjct 621707 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 621648 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | || ||||| | |||| | |||| || |||||||| || || |||||||| Sbjct 621647 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 621588 Query 451442 GCATATGGA 451450 | |||||| Sbjct 621587 TCTTATGGA 621579 >seq4 Length=32292456 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || ||||| || || || || | || ||||| || || Sbjct 28749305 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCC 28749364 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| |||||||| || || ||||| || || Sbjct 28749365 GATACGATTGACAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAG 28749424 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | || || || ||||| ||||| | ||| | ||||||||||| Sbjct 28749425 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAAC 28749484 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 28749485 ATCCAGAAGGA 28749495 >seq5 Length=25164199 Score = 91.5 bits (100), Expect = 6e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || || ||||||||||| ||||| || |||||| |||||||| Sbjct 11020987 GCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 11020928 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| || | ||||| || || || || || ||||| ||||| || | Sbjct 11020927 GGCCGGATTGCTGGGTTGGAAGTTCTACGCATCATAAACGAGCCTACTGCAGCATCTTTG 11020868 Query 451442 GCATATGG 451449 |||||||| Sbjct 11020867 GCATATGG 11020860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975473159014304