Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq3 131 7e-25
seq4 93.3 2e-13
seq5 91.5 6e-13
>seq3
Length=46202548
Score = 131 bits (144), Expect = 7e-25
Identities = 248/365 (68%), Gaps = 9/365 (2%)
Strand=Plus/Plus
Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306
|||||||||||||| |||||||||| || ||| || | || ||| || | ||
Sbjct 43849271 GAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCTGAAGCTTACCTAGGA 43849330
Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366
|| | || | |||| || | |||||||| ||||| ||||||||| | || ||||
Sbjct 43849331 TCAACTGTGAAGAATGCTGTTGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGCAG 43849390
Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426
|||||||||||||| || |||||| ||| | |||||| | || || || ||||| ||
Sbjct 43849391 GCAACTAAAGATGCCGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCA 43849450
Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaaaa 451480
||||| ||||| | || ||||| || | || || | || | || ||
Sbjct 43849451 ACAGCTGCTGCAATTGCTTATGGTCTTGACAA---GAAGGCGACTAGTGTTGGTGAGAAG 43849507
Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540
|| | | | ||||| ||||||| || ||| |||| || | ||| |||||||
Sbjct 43849508 AACGTGCTCATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCCCTCCTTACAATTGAG 43849567
Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600
|| || | ||||| || || ||||| |||||| ||||| || || || || || ||
Sbjct 43849568 GAGGGTATTTTTGAGGTGAAAGCAACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTT 43849627
Query 451601 GATAA 451605
|| ||
Sbjct 43849628 GACAA 43849632
Score = 93.3 bits (102), Expect = 2e-13
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || ||||||||||| ||||||||||||||||| || || || || || || |||||
Sbjct 621707 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 621648
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| | || ||||| | |||| | |||| || |||||||| || || ||||||||
Sbjct 621647 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 621588
Query 451442 GCATATGGA 451450
| ||||||
Sbjct 621587 TCTTATGGA 621579
>seq4
Length=32292456
Score = 93.3 bits (102), Expect = 2e-13
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || |||||||| || || ||||| || || || || | || ||||| || ||
Sbjct 28749305 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCC 28749364
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||||| | | || || ||||| |||||||| || || ||||| || ||
Sbjct 28749365 GATACGATTGACAATGTGAAGGCTAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAG 28749424
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || | || ||| | || || || ||||| ||||| | ||| | |||||||||||
Sbjct 28749425 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAAC 28749484
Query 391230 ATTGATAAGGA 391240
|| | |||||
Sbjct 28749485 ATCCAGAAGGA 28749495
>seq5
Length=25164199
Score = 91.5 bits (100), Expect = 6e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
||||| || || || || || ||||||||||| ||||| || |||||| ||||||||
Sbjct 11020987 GCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 11020928
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| | |||||||| || | ||||| || || || || || ||||| ||||| || |
Sbjct 11020927 GGCCGGATTGCTGGGTTGGAAGTTCTACGCATCATAAACGAGCCTACTGCAGCATCTTTG 11020868
Query 451442 GCATATGG 451449
||||||||
Sbjct 11020867 GCATATGG 11020860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975473159014304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |