Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 223 3e-52 seq12 129 4e-24 seq2 98.7 8e-15 >seq3 Length=46202548 Score = 223 bits (246), Expect = 3e-52 Identities = 693/1063 (65%), Gaps = 20/1063 (2%) Strand=Plus/Minus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 |||||| |||||| || ||||| ||||| || | ||||| ||| || ||||||| Sbjct 43850399 CGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 43850340 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || || | ||||| ||||| || || | |||| | || || ||| || || Sbjct 43850339 CTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGGAGATTGTTGTCCC 43850280 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | || | | | |||||||| | | || || || ||| || ||||| || | Sbjct 43850279 TGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGCTGGTTATCGGAGT 43850220 Query 517437 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || | || || ||| || || |||||| || ||||| || || | Sbjct 43850219 AGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGGGATGAGCACT 43850161 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||| || ||||| || | ||||||||| || ||||| ||||||| || | | Sbjct 43850160 GTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCACATCAAGGAGAAGA 43850101 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || || | | ||| ||| ||||| || || | |||||||| Sbjct 43850100 AGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTGGACGGCAGCACCG 43850041 Query 517616 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673 ||||| |||||||||||||| |||| | || || |||| || || ||||| || | Sbjct 43850040 TATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCGTTGAAGAAGT 43849983 Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 ||||| || ||| | || || | || ||| || ||||| | |||| |||| Sbjct 43849982 CCTGCAGAAGCTGCTGAACCCTGGGGATTCTAGTTGAACCACCAACAAGGACAACATCAT 43849923 Query 517734 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCC 517792 | || ||| | || |||| |||| |||| | || || || || || | || Sbjct 43849922 GGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATACAT 43849864 Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 517852 || || | ||| ||| || || || | ||||| || | |||| || || Sbjct 43849863 TTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATAGTGGAATAGAAA 43849804 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 |||| || || || | ||||||| |||||| |||||||| | | || || || | Sbjct 43849803 TCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGTGGAGGAGAGGGTC 43849744 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 | || || | |||||||| ||| || || || | || || | | | || | | | Sbjct 43849743 CTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG--GGTTCCCACTGA 43849686 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 ||| | |||| ||||||||||| |||| ||| | | || || || || |||| Sbjct 43849685 TATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACCAGGCGGTTGTCAA 43849626 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || || || || | | ||| | || | || ||| | || | |||| || || | Sbjct 43849625 AGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCAAAAATACCCTCCT 43849566 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | || | |||||| || |||||||| | |||||||| || || ||| Sbjct 43849565 CAATTGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAAATGAGCACGTTCT 43849506 Query 518151 TTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 | || | ||| || || ||||||||||| |||| |||||||| ||||| Sbjct 43849505 TCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGC 43849447 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| || || | || |||||||||||| ||||| || ||||||||||| || || Sbjct 43849446 TCATTGATGATACGCATAACATTAAGACCCGCAATAACACCGGCATCTTTAGTTGCCTGC 43849387 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || ||||| || || || ||||||||||| | ||| |||| Sbjct 43849386 CTCTGGGAATCATTGAAGTAAGCAGGAACAGTGACAACAGCAT 43849344 Score = 100 bits (110), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 39971007 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCATTGTTTT---TC 39970954 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| | |||||||| || ||||| ||||| | | ||| | Sbjct 39970953 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGCTCATTTATAATGCGGAGAACTTCC 39970894 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 39970893 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 39970834 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 39970833 GGAACAGTAA 39970824 >seq12 Length=18681871 Score = 129 bits (142), Expect = 4e-24 Identities = 226/328 (69%), Gaps = 6/328 (2%) Strand=Plus/Plus Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||||| |||| ||| | | || | |||||| |||||||||||||| || Sbjct 2060667 TTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATACGATTGTCAAAATCTTCACCACCA 2060726 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | || || | || | || | || || |||| | | || Sbjct 2060727 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 2060786 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 518161 | |||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 2060787 GAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 2060846 Query 518162 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 ||| || |||||||||||||| |||| ||| |||||||| || || || || || | | Sbjct 2060847 GTGGCCTTCTTATCAAGACCATAGGCAATAGCTGCAGCAGTCGGCTCGTTGATGATACGC 2060906 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 2060907 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 2060966 Query 518279 AAATATGCAGGAACAGTAATAACGGCAT 518306 || || ||||||||||| | |||||||| Sbjct 2060967 AAGTAGGCAGGAACAGTGACAACGGCAT 2060994 Score = 86.0 bits (94), Expect = 5e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || ||||||||||| |||| ||||||||||| || ||||| || || | || |||| Sbjct 15772615 TTGTCAAGACCATAGGCAATGGCAGCAGCAGTAGGCTCATTGATGATACGCATGACATCG 15772556 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || |||||||| || ||||| || || || || || ||||| ||||| || || ||| Sbjct 15772555 AGGCCAGCAATGACCCCAGCATCCTTGGTAGCCTGCCTCTGTGAGTCGTTGAAGTAAGCA 15772496 Query 518288 GGAAC 518292 | ||| Sbjct 15772495 GTAAC 15772491 >seq2 Length=36083738 Score = 98.7 bits (108), Expect = 8e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 32683477 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 32683536 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 32683537 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 32683596 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 || ||||| | | || |||||||| |||| Sbjct 32683597 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 32683630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780341649527728