Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq3 223 3e-52
seq12 129 4e-24
seq2 98.7 8e-15
>seq3
Length=46202548
Score = 223 bits (246), Expect = 3e-52
Identities = 693/1063 (65%), Gaps = 20/1063 (2%)
Strand=Plus/Minus
Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316
|||||| |||||| || ||||| ||||| || | ||||| ||| || |||||||
Sbjct 43850399 CGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 43850340
Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376
| || || | ||||| ||||| || || | |||| | || || ||| || ||
Sbjct 43850339 CTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGGAGATTGTTGTCCC 43850280
Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436
| || | | | |||||||| | | || || || ||| || ||||| || |
Sbjct 43850279 TGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGCTGGTTATCGGAGT 43850220
Query 517437 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495
| || | || || ||| || || |||||| || ||||| || || |
Sbjct 43850219 AGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGGGATGAGCACT 43850161
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
||||| | ||| || ||||| || | ||||||||| || ||||| ||||||| || | |
Sbjct 43850160 GTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCACATCAAGGAGAAGA 43850101
Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| || || | || || | | ||| ||| ||||| || || | ||||||||
Sbjct 43850100 AGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTGGACGGCAGCACCG 43850041
Query 517616 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 517673
||||| |||||||||||||| |||| | || || |||| || || ||||| || |
Sbjct 43850040 TATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCGTTGAAGAAGT 43849983
Query 517674 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733
||||| || ||| | || || | || ||| || ||||| | |||| ||||
Sbjct 43849982 CCTGCAGAAGCTGCTGAACCCTGGGGATTCTAGTTGAACCACCAACAAGGACAACATCAT 43849923
Query 517734 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCC 517792
| || ||| | || |||| |||| |||| | || || || || || | ||
Sbjct 43849922 GGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATACAT 43849864
Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 517852
|| || | ||| ||| || || || | ||||| || | |||| || ||
Sbjct 43849863 TTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATAGTGGAATAGAAA 43849804
Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912
|||| || || || | ||||||| |||||| |||||||| | | || || || |
Sbjct 43849803 TCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGTGGAGGAGAGGGTC 43849744
Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970
| || || | |||||||| ||| || || || | || || | | | || | | |
Sbjct 43849743 CTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG--GGTTCCCACTGA 43849686
Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030
||| | |||| ||||||||||| |||| ||| | | || || || || ||||
Sbjct 43849685 TATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACCAGGCGGTTGTCAA 43849626
Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090
| || || || || | | ||| | || | || ||| | || | |||| || || |
Sbjct 43849625 AGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCAAAAATACCCTCCT 43849566
Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150
||| | | || | |||||| || |||||||| | |||||||| || || |||
Sbjct 43849565 CAATTGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAAATGAGCACGTTCT 43849506
Query 518151 TTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203
| || | ||| || || ||||||||||| |||| |||||||| |||||
Sbjct 43849505 TCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGC 43849447
Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263
||||| || || | || |||||||||||| ||||| || ||||||||||| || ||
Sbjct 43849446 TCATTGATGATACGCATAACATTAAGACCCGCAATAACACCGGCATCTTTAGTTGCCTGC 43849387
Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
|| || ||||| || || || ||||||||||| | ||| ||||
Sbjct 43849386 CTCTGGGAATCATTGAAGTAAGCAGGAACAGTGACAACAGCAT 43849344
Score = 100 bits (110), Expect = 2e-15
Identities = 137/190 (72%), Gaps = 6/190 (3%)
Strand=Plus/Minus
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167
|||||| ||| || || |||| ||||| | ||| | || |||| |||| || |
Sbjct 39971007 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCATTGTTTT---TC 39970954
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
|| |||| |||||| |||| | |||||||| || ||||| ||||| | | ||| |
Sbjct 39970953 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGCTCATTTATAATGCGGAGAACTTCC 39970894
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
| || ||||| | ||| |||||||| || ||| || ||||| || || || ||||||
Sbjct 39970893 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 39970834
Query 518288 GGAACAGTAA 518297
||||||||||
Sbjct 39970833 GGAACAGTAA 39970824
>seq12
Length=18681871
Score = 129 bits (142), Expect = 4e-24
Identities = 226/328 (69%), Gaps = 6/328 (2%)
Strand=Plus/Plus
Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044
|| |||||||| |||| ||| | | || | |||||| |||||||||||||| ||
Sbjct 2060667 TTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATACGATTGTCAAAATCTTCACCACCA 2060726
Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104
| | || | || | || || | || | || | || || |||| | | ||
Sbjct 2060727 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 2060786
Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 518161
| |||||| ||| ||||| || | ||||| || || |||||| | || |
Sbjct 2060787 GAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 2060846
Query 518162 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218
||| || |||||||||||||| |||| ||| |||||||| || || || || || | |
Sbjct 2060847 GTGGCCTTCTTATCAAGACCATAGGCAATAGCTGCAGCAGTCGGCTCGTTGATGATACGC 2060906
Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278
| ||||| ||||||||||| ||| ||||| || ||||| || || || || || ||
Sbjct 2060907 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 2060966
Query 518279 AAATATGCAGGAACAGTAATAACGGCAT 518306
|| || ||||||||||| | ||||||||
Sbjct 2060967 AAGTAGGCAGGAACAGTGACAACGGCAT 2060994
Score = 86.0 bits (94), Expect = 5e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
|| ||||||||||| |||| ||||||||||| || ||||| || || | || ||||
Sbjct 15772615 TTGTCAAGACCATAGGCAATGGCAGCAGCAGTAGGCTCATTGATGATACGCATGACATCG 15772556
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
|| |||||||| || ||||| || || || || || ||||| ||||| || || |||
Sbjct 15772555 AGGCCAGCAATGACCCCAGCATCCTTGGTAGCCTGCCTCTGTGAGTCGTTGAAGTAAGCA 15772496
Query 518288 GGAAC 518292
| |||
Sbjct 15772495 GTAAC 15772491
>seq2
Length=36083738
Score = 98.7 bits (108), Expect = 8e-15
Identities = 114/154 (74%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236
||||| | | ||||||||||||||||||||| || || ||| |||| ||| ||||||
Sbjct 32683477 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 32683536
Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296
|| | || ||||| || || || || | || | ||| |||||||| || ||||| |||
Sbjct 32683537 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 32683596
Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330
|| ||||| | | || |||||||| ||||
Sbjct 32683597 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 32683630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780341649527728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |