Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 seq6 100 3e-16 >seq1 Length=43445878 Score = 102 bits (112), Expect = 1e-16 Identities = 276/412 (67%), Gaps = 13/412 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || || ||||| || || | || || || || ||||| || ||| Sbjct 23572098 CGGTCGAAGCGCCCCGGCCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTGGTGGCG 23572039 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619 || || || | | ||| | || | || || |||||||| || ||||| |||||| Sbjct 23572038 GCGATCACGATGACGCCGCTGTCGCCGCCGCCGAACCCGTCCATCTCGGTGAGCAGCTGG 23571979 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATACCACCT-GCCGAACGCTTCTTAC 11677 || | |||||| || | ||| ||||| | || | | || |||| |||| | | Sbjct 23571978 TTCAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATCCCCGCGCCG--CGCTGCCGCC 23571921 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG--CCTGTTC 11735 | || ||||| ||||| |||||||| |||| ||||| | | || | || ||||| | Sbjct 23571920 CCACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGCTCGC-CTTGGCCCTGT-C 23571863 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || || ||| ||| || || || ||||||||||| | ||| | | || Sbjct 23571862 GAACAGGTCGCGCACCCGCGACGCGCCGACGCCGACGAACATCTCGATGAA-CTCGGAGC 23571804 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 | ||| || | |||||| || | ||| || ||||| || || || || |||| Sbjct 23571803 CGGACAGCGAGAAGAAGGGCACGCCGGCCTCGCCGGCGATCGCCTTGGCCAGCAGCGTCT 23571744 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | ||||| || || | || | || || |||| ||||||| | ||||| Sbjct 23571743 TCCCCGTCCCCGGCGGGCCGACCAGCAGCACGCCCTTGGGGATCCTCGCACC 23571692 >seq6 Length=30401905 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || ||||||||||| Sbjct 1929688 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCG 1929747 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 1929748 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAG 1929807 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | ||| | ||||| ||| | ||||| Sbjct 1929808 GCGAAGGCGACGAGCCGCTCGGCGAAGCGCTCGCCGC-CGTCGATCCATCGCATGGCCCA 1929866 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || |||||| || | | |||||| || | |||||| Sbjct 1929867 GTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGC 1929905 Score = 96.9 bits (106), Expect = 4e-15 Identities = 250/379 (66%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 11593 AAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC 11652 || || ||||| || || | ||||||||||| ||||| || | |||||| || | Sbjct 30123059 AATCCATCCATCTCAGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCC--C 30123002 Query 11653 ATACCA--CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 | | | || || ||||| | | ||||| || ||||||||||| ||||| ||||| | Sbjct 30123001 CTCCGAGCCCAGCACCACGCTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGC 30122942 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 | || ||||| |||| ||||| || || | || | || || ||||| | Sbjct 30122941 AAGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCGCCGACACCGA 30122882 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830 |||||| ||| ||||| | | || | ||| | |||||| || | ||| || | Sbjct 30122881 CGAACAGCTCGACGAACTCGGACGCGGCACAGGAGAAGAAGGGCACTCCGGCCTCCCCGG 30122822 Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890 ||| ||| || || || || ||||| || || || || | || |||| ||| || Sbjct 30122821 CGACGGCACGCGCCAGCAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCATCCCT 30122762 Query 11891 GGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCT 11950 |||||||||||| || | ||| || || ||||||||||| || || | || Sbjct 30122761 TGGGGATCTTGGCCCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCGACGACCT 30122702 Query 11951 CCTCAAGTTCCTCCTTGGC 11969 ||| || || |||||| Sbjct 30122701 CCTGCAGCTCGAGCTTGGC 30122683 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 11442835 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCC 11442776 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 11442775 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAG 11442716 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 11442715 GCGAAGGCGACGAGGCGCTCGGCGAA 11442690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588904675006400