Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 2e-25
>seq6
Length=30401905
Score = 131 bits (144), Expect = 2e-25
Identities = 278/408 (68%), Gaps = 8/408 (2%)
Strand=Plus/Minus
Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251
||||| || | || || ||||| ||||| || || | |||| | || ||||||
Sbjct 30123149 CGATCGAACCTCCCAGGCCGAAGAAGCGCCGAGTCGAGCACATCAGGCCTGTTTGTCGCG 30123090
Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309
|||| |||| | ||| |||| | |||| ||||||||||| ||||| || ||||
Sbjct 30123089 GCGAGCACAATGACACCACTGTTCCCGG--CAAATCCATCCATCTCAGTCAAGAGCTGGT 30123032
Query 9310 TAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9368
| || || || |||| |||||||| | | | | | ||||||| || ||| | ||
Sbjct 30123031 TGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCG 30122973
Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428
|||||||||||||||||||||||||| || || || || | ||| | || ||
Sbjct 30122972 ACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGAAC 30122913
Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488
|| || | ||||| |||||| ||||| || |||| ||| || || | | |||| |
Sbjct 30122912 AGGTCCCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGACGCGGCA 30122853
Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548
|| || |||||| || | || || || | ||| || || || || ||||| ||
Sbjct 30122852 CAGGAGAAGAAGGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCG 30122793
Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595
|| || ||| || |||| | |||| ||| | || |||||||| ||
Sbjct 30122792 GTCCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 30122746
Score = 123 bits (136), Expect = 3e-23
Identities = 116/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| || ||||| || ||||| || || || || |||||| ||||| |||||||| ||
Sbjct 11442836 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 11442777
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || ||
Sbjct 11442776 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 11442717
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432
|| || || | |||||||||||||||
Sbjct 11442716 GGCGAAGGCGACGAGGCGCTCGGCGAAG 11442689
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| ||||| || ||||| || || || || |||||| ||||| |||||||| ||
Sbjct 1929687 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCC 1929746
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || |||||||| || || ||||||||||| ||||| || ||
Sbjct 1929747 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 1929806
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432
|| || || | || ||||||||||||
Sbjct 1929807 GGCGAAGGCGACGAGCCGCTCGGCGAAG 1929834
Score = 104 bits (114), Expect = 3e-17
Identities = 229/340 (67%), Gaps = 14/340 (4%)
Strand=Plus/Minus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283
||| ||||||||| | | || || || || || |||| || || || | |||||
Sbjct 26807382 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 26807323
Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343
|||||||||||| |||| | || || | ||| || |||| ||||||||| |
Sbjct 26807322 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 26807269
Query 9344 ACCACCAGCAC-TG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397
||||||| || || | |||| |||| || |||||||| ||||||| || || ||
Sbjct 26807268 ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTAT 26807209
Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457
|| || ||| || || | | || ||||| ||||||| ||| || || ||
Sbjct 26807208 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAAAGATCACGAACCCGGGAGGCACCAACTCC 26807149
Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9516
||||||||||||||||| | | | | | || | || || || ||| || ||| |
Sbjct 26807148 CACAAACATCTCCACAAACTCGGATCCTG-ATATCGAGAAAAATGGCACACCAGCTTCTC 26807090
Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
| ||||| || ||| || | ||||||||| || || ||
Sbjct 26807089 CTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 26807050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589909353325120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |