Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq10 495 5e-135
seq8 495 5e-135
seq7 495 5e-135
seq3 93.3 6e-14
>seq10
Length=17164355
Score = 495 bits (548), Expect = 5e-135
Identities = 693/972 (71%), Gaps = 0/972 (0%)
Strand=Plus/Plus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374
|| || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | |
Sbjct 15960387 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 15960446
Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434
|| || || || || | || ||||||||||| ||||| || ||||| || || ||
Sbjct 15960447 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 15960506
Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494
| ||||| ||| ||||||||||| | || || ||||| || ||||||||||| || |
Sbjct 15960507 CGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 15960566
Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554
|||| ||| || |||||||| ||||| ||||| || |||||||| ||| | |||||
Sbjct 15960567 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 15960626
Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614
|| ||| | |||||||| || |||| | || || | | |||||| | ||||| |
Sbjct 15960627 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 15960686
Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674
|| || || | |||||||||| || | | | |||||| | ||||||||
Sbjct 15960687 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 15960746
Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734
|||||| || || || ||||| | ||||| || || ||| | | || || |
Sbjct 15960747 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATT 15960806
Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794
||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| |||
Sbjct 15960807 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 15960866
Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854
|||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||
Sbjct 15960867 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 15960926
Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914
||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | |
Sbjct 15960927 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 15960986
Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974
||||| || || ||||| | |||||| || | ||||||| || || ||||||||
Sbjct 15960987 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 15961046
Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034
|| || || || || || || || || ||||| ||||| || | ||||||||||| ||
Sbjct 15961047 GAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 15961106
Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094
||| |||||||| | | | ||||||||| | || || | ||||| | | ||
Sbjct 15961107 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 15961166
Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154
||| ||||| | ||| | |||||||| ||||| || ||||| ||||| ||||||
Sbjct 15961167 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 15961226
Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214
|| ||||| || || ||| |||||| ||||||||| || | | ||| |
Sbjct 15961227 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 15961286
Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274
|| ||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
Sbjct 15961287 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 15961346
Query 216275 GCTGCTGCTGAA 216286
|||||| ||||
Sbjct 15961347 GCTGCTCTTGAA 15961358
>seq8
Length=23026653
Score = 495 bits (548), Expect = 5e-135
Identities = 693/972 (71%), Gaps = 0/972 (0%)
Strand=Plus/Plus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374
|| || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | |
Sbjct 17290477 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 17290536
Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434
|| || || || || | || ||||||||||| ||||| || ||||| || || ||
Sbjct 17290537 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 17290596
Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494
| ||||| ||| ||||||||||| | || || ||||| || ||||||||||| || |
Sbjct 17290597 CGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 17290656
Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554
|||| ||| || |||||||| ||||| ||||| || |||||||| ||| | |||||
Sbjct 17290657 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 17290716
Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614
|| ||| | |||||||| || |||| | || || | | |||||| | ||||| |
Sbjct 17290717 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 17290776
Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674
|| || || | |||||||||| || | | | |||||| | ||||||||
Sbjct 17290777 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 17290836
Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734
|||||| || || || ||||| | ||||| || || ||| | | || || |
Sbjct 17290837 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATT 17290896
Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794
||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| |||
Sbjct 17290897 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 17290956
Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854
|||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||
Sbjct 17290957 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 17291016
Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914
||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | |
Sbjct 17291017 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 17291076
Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974
||||| || || ||||| | |||||| || | ||||||| || || ||||||||
Sbjct 17291077 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 17291136
Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034
|| || || || || || || || || ||||| ||||| || | ||||||||||| ||
Sbjct 17291137 GAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 17291196
Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094
||| |||||||| | | | ||||||||| | || || | ||||| | | ||
Sbjct 17291197 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 17291256
Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154
||| ||||| | ||| | |||||||| ||||| || ||||| ||||| ||||||
Sbjct 17291257 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 17291316
Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214
|| ||||| || || ||| |||||| ||||||||| || | | ||| |
Sbjct 17291317 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 17291376
Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274
|| ||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
Sbjct 17291377 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 17291436
Query 216275 GCTGCTGCTGAA 216286
|||||| ||||
Sbjct 17291437 GCTGCTCTTGAA 17291448
>seq7
Length=26479886
Score = 495 bits (548), Expect = 5e-135
Identities = 693/972 (71%), Gaps = 0/972 (0%)
Strand=Plus/Plus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374
|| || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | |
Sbjct 22562206 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 22562265
Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434
|| || || || || | || ||||||||||| ||||| || ||||| || || ||
Sbjct 22562266 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 22562325
Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494
| ||||| ||| ||||||||||| | || || ||||| || ||||||||||| || |
Sbjct 22562326 CGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 22562385
Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554
|||| ||| || |||||||| ||||| ||||| || |||||||| ||| | |||||
Sbjct 22562386 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 22562445
Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614
|| ||| | |||||||| || |||| | || || | | |||||| | ||||| |
Sbjct 22562446 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 22562505
Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674
|| || || | |||||||||| || | | | |||||| | ||||||||
Sbjct 22562506 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 22562565
Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734
|||||| || || || ||||| | ||||| || || ||| | | || || |
Sbjct 22562566 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATT 22562625
Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794
||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| |||
Sbjct 22562626 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 22562685
Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854
|||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||
Sbjct 22562686 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 22562745
Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914
||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | |
Sbjct 22562746 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 22562805
Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974
||||| || || ||||| | |||||| || | ||||||| || || ||||||||
Sbjct 22562806 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 22562865
Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034
|| || || || || || || || || ||||| ||||| || | ||||||||||| ||
Sbjct 22562866 GAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 22562925
Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094
||| |||||||| | | | ||||||||| | || || | ||||| | | ||
Sbjct 22562926 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 22562985
Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154
||| ||||| | ||| | |||||||| ||||| || ||||| ||||| ||||||
Sbjct 22562986 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 22563045
Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214
|| ||||| || || ||| |||||| ||||||||| || | | ||| |
Sbjct 22563046 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 22563105
Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274
|| ||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
Sbjct 22563106 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 22563165
Query 216275 GCTGCTGCTGAA 216286
|||||| ||||
Sbjct 22563166 GCTGCTCTTGAA 22563177
Score = 136 bits (150), Expect = 6e-27
Identities = 189/265 (71%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374
|| || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | |
Sbjct 22561882 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 22561941
Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434
|| || || || || | || ||||||||||| ||||| || ||||| || | ||
Sbjct 22561942 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGATATT 22562001
Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494
| | || ||| ||||||||||| | || || ||||| || ||||||||||| || |
Sbjct 22562002 CGTGGGCATGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 22562061
Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554
|||| ||| || |||||||| |||| ||||| || |||||||| ||| | |||||
Sbjct 22562062 CCTACTTCTGCGGCGATCGGATTGAACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 22562121
Query 215555 GAATGGCTCTACAATGGTGGACCTT 215579
|| ||| | |||||||| || ||||
Sbjct 22562122 GAGTGGTTATACAATGGCGGTCCTT 22562146
>seq3
Length=46202548
Score = 93.3 bits (102), Expect = 6e-14
Identities = 106/141 (75%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178
|||||||| ||||| || ||||| ||||| |||||||| ||||| || || |||
Sbjct 10578771 ACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA-TCTGTAGTTGATAGCCAAGGT 10578713
Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238
|||||| ||||||||| || | | ||| | ||| |||| |||||||||||||
Sbjct 10578712 CGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAATCTTGCTATGGAAGTAATG 10578653
Query 216239 CACGAGCGTAACGCTCACAAC 216259
||||| ||||| |||||| ||
Sbjct 10578652 CACGAACGTAATGCTCACCAC 10578632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 744991370618240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |