Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq10 495 5e-135 seq8 495 5e-135 seq7 495 5e-135 seq3 93.3 6e-14 >seq10 Length=17164355 Score = 495 bits (548), Expect = 5e-135 Identities = 693/972 (71%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 15960387 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 15960446 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 15960447 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 15960506 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| ||||||||||| | || || ||||| || ||||||||||| || | Sbjct 15960507 CGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 15960566 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 15960567 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 15960626 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 15960627 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 15960686 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | |||||||||| || | | | |||||| | |||||||| Sbjct 15960687 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 15960746 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| || || ||| | | || || | Sbjct 15960747 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATT 15960806 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| ||| Sbjct 15960807 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 15960866 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| ||| Sbjct 15960867 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 15960926 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | Sbjct 15960927 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 15960986 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || ||||| | |||||| || | ||||||| || || |||||||| Sbjct 15960987 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 15961046 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 || || || || || || || || || ||||| ||||| || | ||||||||||| || Sbjct 15961047 GAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 15961106 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||| |||||||| | | | ||||||||| | || || | ||||| | | || Sbjct 15961107 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 15961166 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| ||||| || ||||| ||||| |||||| Sbjct 15961167 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 15961226 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| |||||| ||||||||| || | | ||| | Sbjct 15961227 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 15961286 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || ||||||||||||||||||||||| ||||| |||||||||||||| ||||| | Sbjct 15961287 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 15961346 Query 216275 GCTGCTGCTGAA 216286 |||||| |||| Sbjct 15961347 GCTGCTCTTGAA 15961358 >seq8 Length=23026653 Score = 495 bits (548), Expect = 5e-135 Identities = 693/972 (71%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 17290477 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 17290536 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 17290537 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 17290596 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| ||||||||||| | || || ||||| || ||||||||||| || | Sbjct 17290597 CGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 17290656 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 17290657 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 17290716 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 17290717 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 17290776 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | |||||||||| || | | | |||||| | |||||||| Sbjct 17290777 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 17290836 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| || || ||| | | || || | Sbjct 17290837 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATT 17290896 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| ||| Sbjct 17290897 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 17290956 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| ||| Sbjct 17290957 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 17291016 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | Sbjct 17291017 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 17291076 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || ||||| | |||||| || | ||||||| || || |||||||| Sbjct 17291077 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 17291136 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 || || || || || || || || || ||||| ||||| || | ||||||||||| || Sbjct 17291137 GAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 17291196 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||| |||||||| | | | ||||||||| | || || | ||||| | | || Sbjct 17291197 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 17291256 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| ||||| || ||||| ||||| |||||| Sbjct 17291257 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 17291316 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| |||||| ||||||||| || | | ||| | Sbjct 17291317 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 17291376 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || ||||||||||||||||||||||| ||||| |||||||||||||| ||||| | Sbjct 17291377 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 17291436 Query 216275 GCTGCTGCTGAA 216286 |||||| |||| Sbjct 17291437 GCTGCTCTTGAA 17291448 >seq7 Length=26479886 Score = 495 bits (548), Expect = 5e-135 Identities = 693/972 (71%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 22562206 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 22562265 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 22562266 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 22562325 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| ||||||||||| | || || ||||| || ||||||||||| || | Sbjct 22562326 CGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 22562385 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 22562386 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 22562445 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 22562446 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 22562505 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | |||||||||| || | | | |||||| | |||||||| Sbjct 22562506 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 22562565 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| || || ||| | | || || | Sbjct 22562566 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATT 22562625 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| ||| Sbjct 22562626 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 22562685 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| ||| Sbjct 22562686 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 22562745 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | Sbjct 22562746 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 22562805 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || ||||| | |||||| || | ||||||| || || |||||||| Sbjct 22562806 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 22562865 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 || || || || || || || || || ||||| ||||| || | ||||||||||| || Sbjct 22562866 GAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 22562925 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||| |||||||| | | | ||||||||| | || || | ||||| | | || Sbjct 22562926 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 22562985 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| ||||| || ||||| ||||| |||||| Sbjct 22562986 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 22563045 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| |||||| ||||||||| || | | ||| | Sbjct 22563046 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 22563105 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || ||||||||||||||||||||||| ||||| |||||||||||||| ||||| | Sbjct 22563106 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 22563165 Query 216275 GCTGCTGCTGAA 216286 |||||| |||| Sbjct 22563166 GCTGCTCTTGAA 22563177 Score = 136 bits (150), Expect = 6e-27 Identities = 189/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 22561882 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 22561941 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || | || Sbjct 22561942 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGATATT 22562001 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | | || ||| ||||||||||| | || || ||||| || ||||||||||| || | Sbjct 22562002 CGTGGGCATGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 22562061 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| |||| ||||| || |||||||| ||| | ||||| Sbjct 22562062 CCTACTTCTGCGGCGATCGGATTGAACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 22562121 Query 215555 GAATGGCTCTACAATGGTGGACCTT 215579 || ||| | |||||||| || |||| Sbjct 22562122 GAGTGGTTATACAATGGCGGTCCTT 22562146 >seq3 Length=46202548 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/141 (75%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| ||||| || ||||| ||||| |||||||| ||||| || || ||| Sbjct 10578771 ACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA-TCTGTAGTTGATAGCCAAGGT 10578713 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 |||||| ||||||||| || | | ||| | ||| |||| ||||||||||||| Sbjct 10578712 CGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAATCTTGCTATGGAAGTAATG 10578653 Query 216239 CACGAGCGTAACGCTCACAAC 216259 ||||| ||||| |||||| || Sbjct 10578652 CACGAACGTAATGCTCACCAC 10578632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744991370618240