Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq10 531 6e-146
seq8 531 6e-146
seq7 531 6e-146
>seq10
Length=17164355
Score = 531 bits (588), Expect = 6e-146
Identities = 699/969 (72%), Gaps = 0/969 (0%)
Strand=Plus/Plus
Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758
||| |||| ||||| | ||||| | || | || ||||||||||| |||||||||||
Sbjct 15960375 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 15960434
Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818
|||| | ||| | | ||||| | || |||||||| || || || || ||
Sbjct 15960435 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 15960494
Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878
|| ||||| || | || ||||| | ||||| || | || || ||||| || ||||||
Sbjct 15960495 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 15960554
Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938
||||| || |||| |||| || ||||| | ||||| || || |||||||||||
Sbjct 15960555 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 15960614
Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998
||| || | ||||||||||| || || || ||||||||| | || || | | ||||||
Sbjct 15960615 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 15960674
Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058
| | || | || || |||||| | |||||||||| | |||| | ||||||
Sbjct 15960675 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 15960734
Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118
||||||||||| ||| |||||||| ||||| || |||| || |||||| |||||
Sbjct 15960735 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTG 15960794
Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178
| || ||| | ||||| ||| |||||| || || |||||| |||| || || |||||
Sbjct 15960795 ATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 15960854
Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238
|| ||||| ||| | |||||||| |||||||| ||||| |||||||| ||||| || |||
Sbjct 15960855 TTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATG 15960914
Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298
||| || |||||| | ||||| || | || ||| || ||||| ||||| | |||
Sbjct 15960915 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 15960974
Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358
|| ||| | | ||||| || || || || ||||| || || | || |||| |||
Sbjct 15960975 ACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTT 15961034
Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418
|| ||||| ||||| || || || ||||| || || ||||| || ||||| || | |||
Sbjct 15961035 GGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATC 15961094
Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478
|||||||||||||| |||||||| |||| | | ||||||||| | ||| | | |||
Sbjct 15961095 TTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 15961154
Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538
|||||| | || ||||| ||| | | |||||| | || ||||| || || || || |||
Sbjct 15961155 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGA 15961214
Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598
|| || |||||||| || | || ||| | ||| || || ||| ||||| ||
Sbjct 15961215 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 15961274
Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658
| | ||| | || || || ||||||||||||||||| || |||||||| |||||||||
Sbjct 15961275 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 15961334
Query 170659 CCACTTGAC 170667
|| || |||
Sbjct 15961335 CCTCTAGAC 15961343
>seq8
Length=23026653
Score = 531 bits (588), Expect = 6e-146
Identities = 699/969 (72%), Gaps = 0/969 (0%)
Strand=Plus/Plus
Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758
||| |||| ||||| | ||||| | || | || ||||||||||| |||||||||||
Sbjct 17290465 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 17290524
Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818
|||| | ||| | | ||||| | || |||||||| || || || || ||
Sbjct 17290525 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 17290584
Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878
|| ||||| || | || ||||| | ||||| || | || || ||||| || ||||||
Sbjct 17290585 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 17290644
Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938
||||| || |||| |||| || ||||| | ||||| || || |||||||||||
Sbjct 17290645 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 17290704
Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998
||| || | ||||||||||| || || || ||||||||| | || || | | ||||||
Sbjct 17290705 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 17290764
Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058
| | || | || || |||||| | |||||||||| | |||| | ||||||
Sbjct 17290765 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 17290824
Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118
||||||||||| ||| |||||||| ||||| || |||| || |||||| |||||
Sbjct 17290825 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTG 17290884
Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178
| || ||| | ||||| ||| |||||| || || |||||| |||| || || |||||
Sbjct 17290885 ATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 17290944
Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238
|| ||||| ||| | |||||||| |||||||| ||||| |||||||| ||||| || |||
Sbjct 17290945 TTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATG 17291004
Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298
||| || |||||| | ||||| || | || ||| || ||||| ||||| | |||
Sbjct 17291005 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 17291064
Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358
|| ||| | | ||||| || || || || ||||| || || | || |||| |||
Sbjct 17291065 ACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTT 17291124
Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418
|| ||||| ||||| || || || ||||| || || ||||| || ||||| || | |||
Sbjct 17291125 GGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATC 17291184
Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478
|||||||||||||| |||||||| |||| | | ||||||||| | ||| | | |||
Sbjct 17291185 TTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 17291244
Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538
|||||| | || ||||| ||| | | |||||| | || ||||| || || || || |||
Sbjct 17291245 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGA 17291304
Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598
|| || |||||||| || | || ||| | ||| || || ||| ||||| ||
Sbjct 17291305 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 17291364
Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658
| | ||| | || || || ||||||||||||||||| || |||||||| |||||||||
Sbjct 17291365 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 17291424
Query 170659 CCACTTGAC 170667
|| || |||
Sbjct 17291425 CCTCTAGAC 17291433
Score = 109 bits (120), Expect = 6e-19
Identities = 135/185 (73%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 170311 ATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAA 170370
||||| || || || || ||||| || || | || |||||||| || ||||| |||
Sbjct 13113463 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAA 13113522
Query 170371 GAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCT 170430
|| || || || ||| | || || ||||| || ||||| || | |||||||||||||||
Sbjct 13113523 GAGACTTATAATATTATGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 13113582
Query 170431 AGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATC 170490
|| |||||||| |||| | | ||||| ||| | ||| | | | ||||||| | ||
Sbjct 13113583 AGTTTTAACAACTCTCGTTCTTTACACTTTTTCTTGGCTGCTTGGCATGTAGTAGGGATT 13113642
Query 170491 TGGTT 170495
|||||
Sbjct 13113643 TGGTT 13113647
>seq7
Length=26479886
Score = 531 bits (588), Expect = 6e-146
Identities = 699/969 (72%), Gaps = 0/969 (0%)
Strand=Plus/Plus
Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758
||| |||| ||||| | ||||| | || | || ||||||||||| |||||||||||
Sbjct 22562194 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 22562253
Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818
|||| | ||| | | ||||| | || |||||||| || || || || ||
Sbjct 22562254 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 22562313
Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878
|| ||||| || | || ||||| | ||||| || | || || ||||| || ||||||
Sbjct 22562314 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 22562373
Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938
||||| || |||| |||| || ||||| | ||||| || || |||||||||||
Sbjct 22562374 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 22562433
Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998
||| || | ||||||||||| || || || ||||||||| | || || | | ||||||
Sbjct 22562434 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 22562493
Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058
| | || | || || |||||| | |||||||||| | |||| | ||||||
Sbjct 22562494 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 22562553
Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118
||||||||||| ||| |||||||| ||||| || |||| || |||||| |||||
Sbjct 22562554 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTG 22562613
Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178
| || ||| | ||||| ||| |||||| || || |||||| |||| || || |||||
Sbjct 22562614 ATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 22562673
Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238
|| ||||| ||| | |||||||| |||||||| ||||| |||||||| ||||| || |||
Sbjct 22562674 TTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATG 22562733
Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298
||| || |||||| | ||||| || | || ||| || ||||| ||||| | |||
Sbjct 22562734 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 22562793
Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358
|| ||| | | ||||| || || || || ||||| || || | || |||| |||
Sbjct 22562794 ACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTT 22562853
Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418
|| ||||| ||||| || || || ||||| || || ||||| || ||||| || | |||
Sbjct 22562854 GGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATC 22562913
Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478
|||||||||||||| |||||||| |||| | | ||||||||| | ||| | | |||
Sbjct 22562914 TTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 22562973
Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538
|||||| | || ||||| ||| | | |||||| | || ||||| || || || || |||
Sbjct 22562974 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGA 22563033
Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598
|| || |||||||| || | || ||| | ||| || || ||| ||||| ||
Sbjct 22563034 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 22563093
Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658
| | ||| | || || || ||||||||||||||||| || |||||||| |||||||||
Sbjct 22563094 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 22563153
Query 170659 CCACTTGAC 170667
|| || |||
Sbjct 22563154 CCTCTAGAC 22563162
Score = 131 bits (144), Expect = 2e-25
Identities = 209/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758
||| |||| ||||| | ||||| | || | || ||||||||||| |||||||||||
Sbjct 22561870 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 22561929
Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818
|||| | ||| | | ||||| | || |||||||| || || || || ||
Sbjct 22561930 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 22561989
Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878
|| |||| || | | | ||| | ||||| || | || || ||||| || ||||||
Sbjct 22561990 ATTGATGATATTCGTGGGCATGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 22562049
Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938
||||| || |||| |||| || ||||| | |||| || || |||||||||||
Sbjct 22562050 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGAACTTTTACCCAATTTGGGAAGCT 22562109
Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998
||| || | ||||||||||| || || || ||||||||| | || || | | ||||||
Sbjct 22562110 GCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 22562169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582777417107200
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