Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-18 seq2 107 2e-17 seq5 100 2e-15 seq6 96.9 3e-14 seq12 93.3 3e-13 >seq3 Length=46202548 Score = 111 bits (122), Expect = 1e-18 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || ||||| || | ||| |||||||||| |||||| | || || ||| | | || Sbjct 43849256 AAGCAATTCTCTGCCGAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCT 43849315 Query 550370 AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||| | || |||| || | | |||| || | ||||| || || || || || Sbjct 43849316 GAAGCTTACCTAGGATCAACT-GTGAAGAATGCTGTTGTCACTGTTCCTGCTTACTTCAA 43849374 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || || | || || ||||||||||| || |||||| || ||||||||| | || Sbjct 43849375 TGATTCCCAGAGGCAGGCAACTAAAGATGCCGGTGTTATTGCGGGTCTTAATGTTATGCG 43849434 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| |||||||| || || ||||||||| |||| ||||| ||||| || Sbjct 43849435 TATCATCAATGAGCCAACAGCTGCTGCAATTGCTTATGGTCTTGACAA 43849482 Score = 109 bits (120), Expect = 4e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 39970806 AAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAA 39970865 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||||||||||| ||| | | ||||| || ||||| ||||| || |||| Sbjct 39970866 CAAAAGATGCTGGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTG 39970925 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 39970926 CTGCATCCCTTGCTTATGGTTTTGAGAA 39970953 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || ||||| ||||| || |||||| Sbjct 621707 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 621648 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || || ||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 621647 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 621588 Query 550520 GCATATGGA 550528 | |||||| Sbjct 621587 TCTTATGGA 621579 >seq2 Length=36083738 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||||||||| | || ||||| || || || |||||| Sbjct 32683604 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 32683545 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 32683544 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 32683485 Query 550520 GCATATGGA 550528 | |||||| Sbjct 32683484 TCTTATGGA 32683476 >seq5 Length=25164199 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || ||||||||||| |||||||||||| | ||| | Sbjct 11020998 AAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCAA 11020939 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| || || || || || ||||||| Sbjct 11020938 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTACGCATCATAAACGAGCCTACTG 11020879 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || | | |||||||| |||| || Sbjct 11020878 CAGCATCTTTGGCATATGGGTTTGAAAA 11020851 >seq6 Length=30401905 Score = 96.9 bits (106), Expect = 3e-14 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || || ||||| || ||||| ||| | ||| || |||||||| || || Sbjct 26902622 CCTGAGGCGTAGGACAAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAATCCGCGAGG 26902565 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||| || ||||| || || ||||| || || | |||||| ||||| ||||| Sbjct 26902564 GTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGAATG 26902505 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429 || || || |||||||| || || || | ||||||||||||| | || | | || Sbjct 26902504 CCCTCCTTGTCTTGAATCTTGGCCTTCACATCGTCAATTGTATCAGAG-GACTCAACCTC 26902446 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || ||||| || || || || || || ||||| Sbjct 26902445 GAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 26902401 >seq12 Length=18681871 Score = 93.3 bits (102), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550418 GCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTT 550477 || || || || |||||||| | || ||||| || |||||||| |||||||| || Sbjct 15772497 GCTTACTTCAACGACTCACAGAGGCAGGCTACCAAGGATGCTGGGGTCATTGCTGGCCTC 15772556 Query 550478 AATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| |||||||| |||||||||||||| |||| ||||| ||||| || Sbjct 15772557 GATGTCATGCGTATCATCAATGAGCCTACTGCTGCTGCCATTGCCTATGGTCTTGACAA 15772615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028783654867120