Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq10 506 6e-139 seq8 506 6e-139 seq7 506 6e-139 >seq10 Length=17164355 Score = 506 bits (560), Expect = 6e-139 Identities = 701/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 15960375 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 15960434 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || ||||| Sbjct 15960435 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 15960493 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || ||| | |||||||||||||| || || Sbjct 15960494 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 15960553 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || |||||| | || |||||||| || |||||||| Sbjct 15960554 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 15960613 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| ||||||||||||| || ||| | || ||| | | ||||| Sbjct 15960614 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 15960673 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 15960674 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 15960733 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| |||| || | | || ||| ||| || ||||| Sbjct 15960734 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTT 15960793 Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289 |||| ||| | || ||||| ||||| |||||| |||||| | || || |||||||| Sbjct 15960794 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 15960853 Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349 ||| ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || || Sbjct 15960854 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 15960913 Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409 | ||||| ||||| || ||||| || | || ||| ||||||||| || ||||| Sbjct 15960914 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 15960973 Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469 || || | || ||||| || || | | || ||| | || || | || Sbjct 15960974 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 15961033 Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529 ||| ||||| |||||||| ||||||||||| || || || || || ||||| ||||||| Sbjct 15961034 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 15961093 Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589 || || ||||| |||||||| ||| |||||| | || ||||| | ||| ||||||| Sbjct 15961094 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 15961153 Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649 || || || || ||| | || || | ||||| | || ||||| || || ||||| || Sbjct 15961154 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 15961213 Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708 || || || ||||| || ||||| ||| | || | | || || ||| ||||||| Sbjct 15961214 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTG 15961272 Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768 || | | ||||| ||||| || || | ||||| |||||||| ||||||||||| |||| Sbjct 15961273 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 15961332 Query 26769 TTCCACTTGACTTAGC 26784 | || || ||| |||| Sbjct 15961333 TCCCTCTAGACCTAGC 15961348 >seq8 Length=23026653 Score = 506 bits (560), Expect = 6e-139 Identities = 701/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 17290465 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 17290524 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || ||||| Sbjct 17290525 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 17290583 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || ||| | |||||||||||||| || || Sbjct 17290584 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 17290643 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || |||||| | || |||||||| || |||||||| Sbjct 17290644 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 17290703 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| ||||||||||||| || ||| | || ||| | | ||||| Sbjct 17290704 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 17290763 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 17290764 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 17290823 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| |||| || | | || ||| ||| || ||||| Sbjct 17290824 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTT 17290883 Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289 |||| ||| | || ||||| ||||| |||||| |||||| | || || |||||||| Sbjct 17290884 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 17290943 Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349 ||| ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || || Sbjct 17290944 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 17291003 Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409 | ||||| ||||| || ||||| || | || ||| ||||||||| || ||||| Sbjct 17291004 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 17291063 Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469 || || | || ||||| || || | | || ||| | || || | || Sbjct 17291064 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 17291123 Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529 ||| ||||| |||||||| ||||||||||| || || || || || ||||| ||||||| Sbjct 17291124 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 17291183 Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589 || || ||||| |||||||| ||| |||||| | || ||||| | ||| ||||||| Sbjct 17291184 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 17291243 Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649 || || || || ||| | || || | ||||| | || ||||| || || ||||| || Sbjct 17291244 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 17291303 Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708 || || || ||||| || ||||| ||| | || | | || || ||| ||||||| Sbjct 17291304 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTG 17291362 Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768 || | | ||||| ||||| || || | ||||| |||||||| ||||||||||| |||| Sbjct 17291363 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 17291422 Query 26769 TTCCACTTGACTTAGC 26784 | || || ||| |||| Sbjct 17291423 TCCCTCTAGACCTAGC 17291438 >seq7 Length=26479886 Score = 506 bits (560), Expect = 6e-139 Identities = 701/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 22562194 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 22562253 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || ||||| Sbjct 22562254 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 22562312 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || ||| | |||||||||||||| || || Sbjct 22562313 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 22562372 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || |||||| | || |||||||| || |||||||| Sbjct 22562373 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 22562432 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| ||||||||||||| || ||| | || ||| | | ||||| Sbjct 22562433 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 22562492 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 22562493 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 22562552 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| |||| || | | || ||| ||| || ||||| Sbjct 22562553 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTT 22562612 Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289 |||| ||| | || ||||| ||||| |||||| |||||| | || || |||||||| Sbjct 22562613 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 22562672 Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349 ||| ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || || Sbjct 22562673 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 22562732 Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409 | ||||| ||||| || ||||| || | || ||| ||||||||| || ||||| Sbjct 22562733 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 22562792 Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469 || || | || ||||| || || | | || ||| | || || | || Sbjct 22562793 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 22562852 Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529 ||| ||||| |||||||| ||||||||||| || || || || || ||||| ||||||| Sbjct 22562853 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 22562912 Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589 || || ||||| |||||||| ||| |||||| | || ||||| | ||| ||||||| Sbjct 22562913 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 22562972 Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649 || || || || ||| | || || | ||||| | || ||||| || || ||||| || Sbjct 22562973 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 22563032 Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708 || || || ||||| || ||||| ||| | || | | || || ||| ||||||| Sbjct 22563033 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTG 22563091 Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768 || | | ||||| ||||| || || | ||||| |||||||| ||||||||||| |||| Sbjct 22563092 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 22563151 Query 26769 TTCCACTTGACTTAGC 26784 | || || ||| |||| Sbjct 22563152 TCCCTCTAGACCTAGC 22563167 Score = 167 bits (184), Expect = 7e-37 Identities = 222/306 (73%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 22561870 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 22561929 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || ||||| Sbjct 22561930 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 22561988 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| |||| || |||| || ||||| || || ||| | |||||||||||||| || || Sbjct 22561989 TATTGATGATATTCGTGGGCATGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 22562048 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || |||||| | | |||||||| || |||||||| Sbjct 22562049 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGAACTTTTACCCAATTTGGGAAGC 22562108 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| ||||||||||||| || ||| | || ||| | | ||||| Sbjct 22562109 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 22562168 Query 26110 CTTAAT 26115 |||||| Sbjct 22562169 CTTAAT 22562174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146709519861312