Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq10 506 6e-139
seq8 506 6e-139
seq7 506 6e-139
>seq10
Length=17164355
Score = 506 bits (560), Expect = 6e-139
Identities = 701/976 (72%), Gaps = 4/976 (0%)
Strand=Plus/Plus
Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870
||| | || || || || |||||||| || | ||||||||||| || | ||||| ||
Sbjct 15960375 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 15960434
Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929
|||| | | || ||| | ||| ||||| | ||||||||||| || || || |||||
Sbjct 15960435 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 15960493
Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989
||| ||||| || |||||||| ||||| || || ||| | |||||||||||||| || ||
Sbjct 15960494 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 15960553
Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049
|| || | | || | ||| || |||||| | || |||||||| || ||||||||
Sbjct 15960554 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 15960613
Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109
|| | | || |||||| ||||||||||||| || ||| | || ||| | | |||||
Sbjct 15960614 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 15960673
Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169
|||| | || ||||| ||| || | |||||||||| || | | || || ||
Sbjct 15960674 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 15960733
Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229
| | || ||||| |||||||||| |||| || | | || ||| ||| || |||||
Sbjct 15960734 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTT 15960793
Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289
|||| ||| | || ||||| ||||| |||||| |||||| | || || ||||||||
Sbjct 15960794 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 15960853
Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349
||| ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || ||
Sbjct 15960854 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 15960913
Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409
| ||||| ||||| || ||||| || | || ||| ||||||||| || |||||
Sbjct 15960914 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 15960973
Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469
|| || | || ||||| || || | | || ||| | || || | ||
Sbjct 15960974 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 15961033
Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529
||| ||||| |||||||| ||||||||||| || || || || || ||||| |||||||
Sbjct 15961034 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 15961093
Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589
|| || ||||| |||||||| ||| |||||| | || ||||| | ||| |||||||
Sbjct 15961094 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 15961153
Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649
|| || || || ||| | || || | ||||| | || ||||| || || ||||| ||
Sbjct 15961154 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 15961213
Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708
|| || || ||||| || ||||| ||| | || | | || || ||| |||||||
Sbjct 15961214 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTG 15961272
Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768
|| | | ||||| ||||| || || | ||||| |||||||| ||||||||||| ||||
Sbjct 15961273 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 15961332
Query 26769 TTCCACTTGACTTAGC 26784
| || || ||| ||||
Sbjct 15961333 TCCCTCTAGACCTAGC 15961348
>seq8
Length=23026653
Score = 506 bits (560), Expect = 6e-139
Identities = 701/976 (72%), Gaps = 4/976 (0%)
Strand=Plus/Plus
Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870
||| | || || || || |||||||| || | ||||||||||| || | ||||| ||
Sbjct 17290465 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 17290524
Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929
|||| | | || ||| | ||| ||||| | ||||||||||| || || || |||||
Sbjct 17290525 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 17290583
Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989
||| ||||| || |||||||| ||||| || || ||| | |||||||||||||| || ||
Sbjct 17290584 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 17290643
Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049
|| || | | || | ||| || |||||| | || |||||||| || ||||||||
Sbjct 17290644 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 17290703
Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109
|| | | || |||||| ||||||||||||| || ||| | || ||| | | |||||
Sbjct 17290704 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 17290763
Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169
|||| | || ||||| ||| || | |||||||||| || | | || || ||
Sbjct 17290764 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 17290823
Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229
| | || ||||| |||||||||| |||| || | | || ||| ||| || |||||
Sbjct 17290824 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTT 17290883
Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289
|||| ||| | || ||||| ||||| |||||| |||||| | || || ||||||||
Sbjct 17290884 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 17290943
Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349
||| ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || ||
Sbjct 17290944 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 17291003
Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409
| ||||| ||||| || ||||| || | || ||| ||||||||| || |||||
Sbjct 17291004 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 17291063
Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469
|| || | || ||||| || || | | || ||| | || || | ||
Sbjct 17291064 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 17291123
Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529
||| ||||| |||||||| ||||||||||| || || || || || ||||| |||||||
Sbjct 17291124 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 17291183
Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589
|| || ||||| |||||||| ||| |||||| | || ||||| | ||| |||||||
Sbjct 17291184 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 17291243
Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649
|| || || || ||| | || || | ||||| | || ||||| || || ||||| ||
Sbjct 17291244 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 17291303
Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708
|| || || ||||| || ||||| ||| | || | | || || ||| |||||||
Sbjct 17291304 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTG 17291362
Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768
|| | | ||||| ||||| || || | ||||| |||||||| ||||||||||| ||||
Sbjct 17291363 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 17291422
Query 26769 TTCCACTTGACTTAGC 26784
| || || ||| ||||
Sbjct 17291423 TCCCTCTAGACCTAGC 17291438
>seq7
Length=26479886
Score = 506 bits (560), Expect = 6e-139
Identities = 701/976 (72%), Gaps = 4/976 (0%)
Strand=Plus/Plus
Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870
||| | || || || || |||||||| || | ||||||||||| || | ||||| ||
Sbjct 22562194 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 22562253
Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929
|||| | | || ||| | ||| ||||| | ||||||||||| || || || |||||
Sbjct 22562254 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 22562312
Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989
||| ||||| || |||||||| ||||| || || ||| | |||||||||||||| || ||
Sbjct 22562313 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 22562372
Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049
|| || | | || | ||| || |||||| | || |||||||| || ||||||||
Sbjct 22562373 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 22562432
Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109
|| | | || |||||| ||||||||||||| || ||| | || ||| | | |||||
Sbjct 22562433 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 22562492
Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169
|||| | || ||||| ||| || | |||||||||| || | | || || ||
Sbjct 22562493 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 22562552
Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229
| | || ||||| |||||||||| |||| || | | || ||| ||| || |||||
Sbjct 22562553 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTT 22562612
Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289
|||| ||| | || ||||| ||||| |||||| |||||| | || || ||||||||
Sbjct 22562613 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 22562672
Query 26290 TTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATAT 26349
||| ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || ||
Sbjct 22562673 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 22562732
Query 26350 GGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGT 26409
| ||||| ||||| || ||||| || | || ||| ||||||||| || |||||
Sbjct 22562733 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 22562792
Query 26410 TACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTT 26469
|| || | || ||||| || || | | || ||| | || || | ||
Sbjct 22562793 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 22562852
Query 26470 TGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAAT 26529
||| ||||| |||||||| ||||||||||| || || || || || ||||| |||||||
Sbjct 22562853 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 22562912
Query 26530 TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCC 26589
|| || ||||| |||||||| ||| |||||| | || ||||| | ||| |||||||
Sbjct 22562913 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 22562972
Query 26590 GGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGG 26649
|| || || || ||| | || || | ||||| | || ||||| || || ||||| ||
Sbjct 22562973 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 22563032
Query 26650 TTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCTG 26708
|| || || ||||| || ||||| ||| | || | | || || ||| |||||||
Sbjct 22563033 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCTG 22563091
Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768
|| | | ||||| ||||| || || | ||||| |||||||| ||||||||||| ||||
Sbjct 22563092 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 22563151
Query 26769 TTCCACTTGACTTAGC 26784
| || || ||| ||||
Sbjct 22563152 TCCCTCTAGACCTAGC 22563167
Score = 167 bits (184), Expect = 7e-37
Identities = 222/306 (73%), Gaps = 2/306 (1%)
Strand=Plus/Plus
Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870
||| | || || || || |||||||| || | ||||||||||| || | ||||| ||
Sbjct 22561870 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 22561929
Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929
|||| | | || ||| | ||| ||||| | ||||||||||| || || || |||||
Sbjct 22561930 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 22561988
Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989
||| |||| || |||| || ||||| || || ||| | |||||||||||||| || ||
Sbjct 22561989 TATTGATGATATTCGTGGGCATGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 22562048
Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049
|| || | | || | ||| || |||||| | | |||||||| || ||||||||
Sbjct 22562049 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGAACTTTTACCCAATTTGGGAAGC 22562108
Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109
|| | | || |||||| ||||||||||||| || ||| | || ||| | | |||||
Sbjct 22562109 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 22562168
Query 26110 CTTAAT 26115
||||||
Sbjct 22562169 CTTAAT 22562174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146709519861312
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