Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq10 544 2e-150
seq8 544 2e-150
seq7 544 2e-150
>seq10
Length=17164355
Score = 544 bits (602), Expect = 2e-150
Identities = 713/983 (73%), Gaps = 6/983 (1%)
Strand=Plus/Minus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || |
Sbjct 15961352 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 15961293
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
| |||||||| | || ||||||||||| | || | || | | |||||| ||
Sbjct 15961292 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 15961233
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
|| || ||||| || || ||||| ||||| ||||||||||| | || | ||| ||
Sbjct 15961232 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 15961173
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208
| ||| || | || ||||||||||||| |||||| |||||| || || ||
Sbjct 15961172 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 15961113
Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268
||| |||||||| |||||||| | || ||||| || |||||||| || ||||| |||||
Sbjct 15961112 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 15961053
Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328
|||||||| ||||| || ||| | || || | || |||||| |||| |||||
Sbjct 15961052 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 15960993
Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385
| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 15960992 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 15960936
Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445
|||||| || || ||||| | ||| || || |||||||||||||| || || ||||||||
Sbjct 15960935 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 15960876
Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505
|| |||| |||||| |||||||| || || || || | |||||||||||||||||||||
Sbjct 15960875 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 15960816
Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565
||||| |||| |||||| | ||||| ||||| || ||||||||||| ||||||||
Sbjct 15960815 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 15960756
Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625
|| ||| ||||| || | |||||| || | |||| |||||||| | || ||||
Sbjct 15960755 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 15960696
Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685
||| | | ||||| | ||||| | ||||| || | ||| || || || || ||
Sbjct 15960695 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 15960636
Query 36686 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 36745
||||||||| || | | |||||||||||| |||||||| ||||| | ||||| ||
Sbjct 15960635 TAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGC 15960576
Query 36746 CGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 36805
|| | || | || || |||||||| || |||||||| || ||||| | || || ||
Sbjct 15960575 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAAC 15960516
Query 36806 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGC 36865
|||||||||||||||||| ||||| || ||||| ||||| | || || || | |||| |
Sbjct 15960515 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 15960456
Query 36866 TGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925
| ||| || || | | ||||||||| | || || ||||| || | || || ||
Sbjct 15960455 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 15960396
Query 36926 GTTGTTTGTACTTGTAACCCAGT 36948
||| | || || || | |||||
Sbjct 15960395 GTTTTCGGTGCTAGTTATCCAGT 15960373
>seq8
Length=23026653
Score = 544 bits (602), Expect = 2e-150
Identities = 713/983 (73%), Gaps = 6/983 (1%)
Strand=Plus/Minus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || |
Sbjct 17291442 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 17291383
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
| |||||||| | || ||||||||||| | || | || | | |||||| ||
Sbjct 17291382 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 17291323
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
|| || ||||| || || ||||| ||||| ||||||||||| | || | ||| ||
Sbjct 17291322 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 17291263
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208
| ||| || | || ||||||||||||| |||||| |||||| || || ||
Sbjct 17291262 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 17291203
Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268
||| |||||||| |||||||| | || ||||| || |||||||| || ||||| |||||
Sbjct 17291202 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 17291143
Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328
|||||||| ||||| || ||| | || || | || |||||| |||| |||||
Sbjct 17291142 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 17291083
Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385
| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 17291082 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 17291026
Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445
|||||| || || ||||| | ||| || || |||||||||||||| || || ||||||||
Sbjct 17291025 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 17290966
Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505
|| |||| |||||| |||||||| || || || || | |||||||||||||||||||||
Sbjct 17290965 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 17290906
Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565
||||| |||| |||||| | ||||| ||||| || ||||||||||| ||||||||
Sbjct 17290905 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 17290846
Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625
|| ||| ||||| || | |||||| || | |||| |||||||| | || ||||
Sbjct 17290845 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 17290786
Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685
||| | | ||||| | ||||| | ||||| || | ||| || || || || ||
Sbjct 17290785 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 17290726
Query 36686 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 36745
||||||||| || | | |||||||||||| |||||||| ||||| | ||||| ||
Sbjct 17290725 TAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGC 17290666
Query 36746 CGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 36805
|| | || | || || |||||||| || |||||||| || ||||| | || || ||
Sbjct 17290665 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAAC 17290606
Query 36806 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGC 36865
|||||||||||||||||| ||||| || ||||| ||||| | || || || | |||| |
Sbjct 17290605 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 17290546
Query 36866 TGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925
| ||| || || | | ||||||||| | || || ||||| || | || || ||
Sbjct 17290545 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 17290486
Query 36926 GTTGTTTGTACTTGTAACCCAGT 36948
||| | || || || | |||||
Sbjct 17290485 GTTTTCGGTGCTAGTTATCCAGT 17290463
Score = 104 bits (114), Expect = 7e-18
Identities = 101/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 36169 GCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGA 36228
|||||||||||| ||| || |||||| || || ||||| |||||||| |||||||
Sbjct 13113628 GCCAAGCAGCCAAGAAAAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGA 13113569
Query 36229 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGA 36288
| | || ||||| || |||||||| || | ||| ||||| |||||||| ||||| || |
Sbjct 13113568 TTAATCGGCCAAAATAACCATGAGCGGCCATAATATTATAAGTCTCTTCCTCTTGACCAA 13113509
Query 36289 ATTTATATCC 36298
|||| || ||
Sbjct 13113508 ATTTGTAACC 13113499
>seq7
Length=26479886
Score = 544 bits (602), Expect = 2e-150
Identities = 713/983 (73%), Gaps = 6/983 (1%)
Strand=Plus/Minus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || |
Sbjct 22563171 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 22563112
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
| |||||||| | || ||||||||||| | || | || | | |||||| ||
Sbjct 22563111 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 22563052
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
|| || ||||| || || ||||| ||||| ||||||||||| | || | ||| ||
Sbjct 22563051 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 22562992
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208
| ||| || | || ||||||||||||| |||||| |||||| || || ||
Sbjct 22562991 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 22562932
Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268
||| |||||||| |||||||| | || ||||| || |||||||| || ||||| |||||
Sbjct 22562931 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 22562872
Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328
|||||||| ||||| || ||| | || || | || |||||| |||| |||||
Sbjct 22562871 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 22562812
Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385
| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 22562811 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 22562755
Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445
|||||| || || ||||| | ||| || || |||||||||||||| || || ||||||||
Sbjct 22562754 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22562695
Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505
|| |||| |||||| |||||||| || || || || | |||||||||||||||||||||
Sbjct 22562694 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22562635
Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565
||||| |||| |||||| | ||||| ||||| || ||||||||||| ||||||||
Sbjct 22562634 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 22562575
Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625
|| ||| ||||| || | |||||| || | |||| |||||||| | || ||||
Sbjct 22562574 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 22562515
Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685
||| | | ||||| | ||||| | ||||| || | ||| || || || || ||
Sbjct 22562514 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 22562455
Query 36686 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 36745
||||||||| || | | |||||||||||| |||||||| ||||| | ||||| ||
Sbjct 22562454 TAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGC 22562395
Query 36746 CGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 36805
|| | || | || || |||||||| || |||||||| || ||||| | || || ||
Sbjct 22562394 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAAC 22562335
Query 36806 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGC 36865
|||||||||||||||||| ||||| || ||||| ||||| | || || || | |||| |
Sbjct 22562334 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 22562275
Query 36866 TGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925
| ||| || || | | ||||||||| | || || ||||| || | || || ||
Sbjct 22562274 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 22562215
Query 36926 GTTGTTTGTACTTGTAACCCAGT 36948
||| | || || || | |||||
Sbjct 22562214 GTTTTCGGTGCTAGTTATCCAGT 22562192
Score = 147 bits (162), Expect = 7e-31
Identities = 213/301 (71%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707
||||| | ||||| || | ||| || || || || ||||||||||| || | | ||||
Sbjct 22562168 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCA 22562109
Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767
|||||||| |||||||| |||| | ||||| || || | || | || || |||
Sbjct 22562108 GCTTCCCAAATTGGGTAAAAGTTCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCA 22562049
Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827
||||| || |||||||| || ||||| | || || ||| || |||||||| |||| |||
Sbjct 22562048 GAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACATGCCCACGAATATCATCAATA 22561989
Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 36887
|| || ||||| ||||| | || || || | |||| | | ||| || || | | |
Sbjct 22561988 TCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA 22561929
Query 36888 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 36947
|||||||| | || || ||||| || | || || ||||| | || || || | ||||
Sbjct 22561928 GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAG 22561869
Query 36948 T 36948
|
Sbjct 22561868 T 22561868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150437090973552
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