Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq10 560 3e-155
seq8 560 3e-155
seq7 560 3e-155
seq3 109 2e-19
>seq10
Length=17164355
Score = 560 bits (620), Expect = 3e-155
Identities = 719/990 (73%), Gaps = 6/990 (1%)
Strand=Plus/Minus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 15961352 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 15961293
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307
|| |||||||| | || ||| |||||||| || | | ||| |||| |||||
Sbjct 15961292 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 15961236
Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367
|| || || ||||| || || ||||| ||||| ||||||||||| || || | ||
Sbjct 15961235 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 15961176
Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427
|| | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||
Sbjct 15961175 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 15961116
Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487
|||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||
Sbjct 15961115 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 15961056
Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547
||| || ||||||||||| || ||| | || || | || ||| |||| ||
Sbjct 15961055 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 15960996
Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607
||| | || | ||| || || | |||||||||||| ||| | | || ||
Sbjct 15960995 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 15960936
Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667
|||||| ||||| ||||| | |||||| || |||||||||||||| || || ||||||||
Sbjct 15960935 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 15960876
Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727
|||||| | ||||||||| ||||||||||| || || | ||||||||||||| ||||||
Sbjct 15960875 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 15960816
Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATA 5787
||| || || | |||||| | || || || | | || || ||||| || ||||||||
Sbjct 15960815 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 15960756
Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847
||| || |||||| || ||||| || | | | |||| |||||||| | || ||||
Sbjct 15960755 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 15960696
Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907
||| || | ||||| | |||||| | || | || | || || || ||||||||
Sbjct 15960695 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 15960636
Query 5908 AAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967
| ||| ||||| | | || |||||||| || || || ||||| || || || ||
Sbjct 15960635 TAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGC 15960576
Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027
|| | || | || ||| || || || || |||||||| || |||| ||| || | ||
Sbjct 15960575 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAAC 15960516
Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087
|| ||||| || || || || || ||||| || ||||| | ||| || | |||||| |
Sbjct 15960515 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 15960456
Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147
|| ||||||||| || | | || ||||| || ||||| ||||| || | || || ||
Sbjct 15960455 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 15960396
Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
||| | ||||||||| | ||||| |||||
Sbjct 15960395 GTTTTCGGTGCTAGTTATCCAGTTGCAGAA 15960366
>seq8
Length=23026653
Score = 560 bits (620), Expect = 3e-155
Identities = 719/990 (73%), Gaps = 6/990 (1%)
Strand=Plus/Minus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 17291442 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 17291383
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307
|| |||||||| | || ||| |||||||| || | | ||| |||| |||||
Sbjct 17291382 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 17291326
Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367
|| || || ||||| || || ||||| ||||| ||||||||||| || || | ||
Sbjct 17291325 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 17291266
Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427
|| | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||
Sbjct 17291265 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 17291206
Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487
|||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||
Sbjct 17291205 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 17291146
Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547
||| || ||||||||||| || ||| | || || | || ||| |||| ||
Sbjct 17291145 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 17291086
Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607
||| | || | ||| || || | |||||||||||| ||| | | || ||
Sbjct 17291085 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 17291026
Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667
|||||| ||||| ||||| | |||||| || |||||||||||||| || || ||||||||
Sbjct 17291025 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 17290966
Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727
|||||| | ||||||||| ||||||||||| || || | ||||||||||||| ||||||
Sbjct 17290965 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 17290906
Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATA 5787
||| || || | |||||| | || || || | | || || ||||| || ||||||||
Sbjct 17290905 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 17290846
Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847
||| || |||||| || ||||| || | | | |||| |||||||| | || ||||
Sbjct 17290845 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 17290786
Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907
||| || | ||||| | |||||| | || | || | || || || ||||||||
Sbjct 17290785 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 17290726
Query 5908 AAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967
| ||| ||||| | | || |||||||| || || || ||||| || || || ||
Sbjct 17290725 TAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGC 17290666
Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027
|| | || | || ||| || || || || |||||||| || |||| ||| || | ||
Sbjct 17290665 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAAC 17290606
Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087
|| ||||| || || || || || ||||| || ||||| | ||| || | |||||| |
Sbjct 17290605 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 17290546
Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147
|| ||||||||| || | | || ||||| || ||||| ||||| || | || || ||
Sbjct 17290545 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 17290486
Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
||| | ||||||||| | ||||| |||||
Sbjct 17290485 GTTTTCGGTGCTAGTTATCCAGTTGCAGAA 17290456
Score = 109 bits (120), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 5391 GCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGA 5450
|||||| ||||| ||| || |||||| ||| |||||||| |||||||| |||||||
Sbjct 13113628 GCCAAGCAGCCAAGAAAAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGA 13113569
Query 5451 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGA 5510
| | || ||||| || |||||||| || | ||| ||||| || ||||||||||| || |
Sbjct 13113568 TTAATCGGCCAAAATAACCATGAGCGGCCATAATATTATAAGTCTCTTCCTCTTGACCAA 13113509
Query 5511 ATTTATATCC 5520
|||| || ||
Sbjct 13113508 ATTTGTAACC 13113499
>seq7
Length=26479886
Score = 560 bits (620), Expect = 3e-155
Identities = 719/990 (73%), Gaps = 6/990 (1%)
Strand=Plus/Minus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 22563171 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 22563112
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307
|| |||||||| | || ||| |||||||| || | | ||| |||| |||||
Sbjct 22563111 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 22563055
Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367
|| || || ||||| || || ||||| ||||| ||||||||||| || || | ||
Sbjct 22563054 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 22562995
Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427
|| | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||
Sbjct 22562994 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 22562935
Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487
|||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||
Sbjct 22562934 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 22562875
Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547
||| || ||||||||||| || ||| | || || | || ||| |||| ||
Sbjct 22562874 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 22562815
Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607
||| | || | ||| || || | |||||||||||| ||| | | || ||
Sbjct 22562814 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 22562755
Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667
|||||| ||||| ||||| | |||||| || |||||||||||||| || || ||||||||
Sbjct 22562754 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22562695
Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727
|||||| | ||||||||| ||||||||||| || || | ||||||||||||| ||||||
Sbjct 22562694 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22562635
Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATA 5787
||| || || | |||||| | || || || | | || || ||||| || ||||||||
Sbjct 22562634 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATA 22562575
Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847
||| || |||||| || ||||| || | | | |||| |||||||| | || ||||
Sbjct 22562574 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 22562515
Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907
||| || | ||||| | |||||| | || | || | || || || ||||||||
Sbjct 22562514 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 22562455
Query 5908 AAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967
| ||| ||||| | | || |||||||| || || || ||||| || || || ||
Sbjct 22562454 TAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGC 22562395
Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027
|| | || | || ||| || || || || |||||||| || |||| ||| || | ||
Sbjct 22562394 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAAC 22562335
Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087
|| ||||| || || || || || ||||| || ||||| | ||| || | |||||| |
Sbjct 22562334 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 22562275
Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147
|| ||||||||| || | | || ||||| || ||||| ||||| || | || || ||
Sbjct 22562274 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 22562215
Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
||| | ||||||||| | ||||| |||||
Sbjct 22562214 GTTTTCGGTGCTAGTTATCCAGTTGCAGAA 22562185
>seq3
Length=46202548
Score = 109 bits (120), Expect = 2e-19
Identities = 112/144 (78%), Gaps = 7/144 (5%)
Strand=Plus/Plus
Query 5212 GTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATC 5271
|| ||||||||| ||||||||||||||||||||| |||| || |||||||| | || |||
Sbjct 10578632 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 10578691
Query 5272 TGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACTGACTGATTGAAGTTAAA 5328
|||||||| || | | ||| |||| ||||| || || || ||||| || ||
Sbjct 10578692 AGCCCAAGTATAAATAACGCGACCTTGGCTA---TCAACTACAGA-TGGTTGAAATTGAA 10578747
Query 5329 GCCGTTAAGATTAAAAGCCATAGT 5352
||||| ||||| |||||||||||
Sbjct 10578748 TCCGTTTAGATTGAAAGCCATAGT 10578771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152632038426768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |