Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq10 527 2e-145
seq8 527 2e-145
seq7 527 2e-145
>seq10
Length=17164355
Score = 527 bits (584), Expect = 2e-145
Identities = 707/979 (72%), Gaps = 6/979 (1%)
Strand=Plus/Minus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
|||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | |
Sbjct 15961348 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 15961289
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572
|||||||| | || ||||||||||| | || | || | | |||||| || ||
Sbjct 15961288 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 15961229
Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632
|| ||||| || || ||||| ||||| ||||||||||| | || | ||| || | |
Sbjct 15961228 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 15961169
Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692
|| || | || ||||||||||||| |||||| |||||| ||| || |||||
Sbjct 15961168 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 15961109
Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752
|||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| |||
Sbjct 15961108 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 15961049
Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812
||||| ||||| || ||| | || || | || |||||| |||| ||||| |
Sbjct 15961048 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 15960989
Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869
|| || | |||| || |||| || ||||||||| ||||| | || ||||||
Sbjct 15960988 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAT 15960932
Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929
|| || || ||||| | ||| || || |||||||||||||| || || |||||||| ||
Sbjct 15960931 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAAT 15960872
Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989
|||| |||||| |||||||| || || || || | ||||||||||||||||||||| |||
Sbjct 15960871 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 15960812
Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049
|| |||| |||||| | ||||| ||||| || ||||||||||| |||||||| ||
Sbjct 15960811 TGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 15960752
Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109
||| ||||| || | ||| || || | |||| |||||||| | || |||| |||
Sbjct 15960751 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAA 15960692
Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169
| | || | | ||||| | ||||| || | ||| || || || || || |||
Sbjct 15960691 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 15960632
Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229
||||| || | | |||||||||||| |||||||| ||||| | ||||| || |||
Sbjct 15960631 CACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAA 15960572
Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289
| || | || || || ||||| || |||||||| || ||||| | || || ||||||
Sbjct 15960571 GTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGC 15960512
Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349
|||||||||||||| ||||| || ||||| ||||| | || || || | |||| | |
Sbjct 15960511 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAA 15960452
Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409
||| || || | | ||||||||| | || || ||||| || | || || |||||
Sbjct 15960451 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTT 15960392
Query 26410 TTTGTACTTGTAACCCAGT 26428
| || || || | |||||
Sbjct 15960391 TCGGTGCTAGTTATCCAGT 15960373
>seq8
Length=23026653
Score = 527 bits (584), Expect = 2e-145
Identities = 707/979 (72%), Gaps = 6/979 (1%)
Strand=Plus/Minus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
|||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | |
Sbjct 17291438 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 17291379
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572
|||||||| | || ||||||||||| | || | || | | |||||| || ||
Sbjct 17291378 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 17291319
Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632
|| ||||| || || ||||| ||||| ||||||||||| | || | ||| || | |
Sbjct 17291318 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 17291259
Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692
|| || | || ||||||||||||| |||||| |||||| ||| || |||||
Sbjct 17291258 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 17291199
Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752
|||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| |||
Sbjct 17291198 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 17291139
Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812
||||| ||||| || ||| | || || | || |||||| |||| ||||| |
Sbjct 17291138 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 17291079
Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869
|| || | |||| || |||| || ||||||||| ||||| | || ||||||
Sbjct 17291078 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAT 17291022
Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929
|| || || ||||| | ||| || || |||||||||||||| || || |||||||| ||
Sbjct 17291021 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAAT 17290962
Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989
|||| |||||| |||||||| || || || || | ||||||||||||||||||||| |||
Sbjct 17290961 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 17290902
Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049
|| |||| |||||| | ||||| ||||| || ||||||||||| |||||||| ||
Sbjct 17290901 TGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 17290842
Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109
||| ||||| || | ||| || || | |||| |||||||| | || |||| |||
Sbjct 17290841 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAA 17290782
Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169
| | || | | ||||| | ||||| || | ||| || || || || || |||
Sbjct 17290781 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 17290722
Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229
||||| || | | |||||||||||| |||||||| ||||| | ||||| || |||
Sbjct 17290721 CACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAA 17290662
Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289
| || | || || || ||||| || |||||||| || ||||| | || || ||||||
Sbjct 17290661 GTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGC 17290602
Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349
|||||||||||||| ||||| || ||||| ||||| | || || || | |||| | |
Sbjct 17290601 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAA 17290542
Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409
||| || || | | ||||||||| | || || ||||| || | || || |||||
Sbjct 17290541 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTT 17290482
Query 26410 TTTGTACTTGTAACCCAGT 26428
| || || || | |||||
Sbjct 17290481 TCGGTGCTAGTTATCCAGT 17290463
Score = 109 bits (120), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 25649 GCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGA 25708
|||||||||||| ||| || |||||| ||| || ||||| |||||||| |||||||
Sbjct 13113628 GCCAAGCAGCCAAGAAAAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGA 13113569
Query 25709 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGA 25768
| | || ||||| || |||||||| || | ||| ||||| |||||||| ||||| || |
Sbjct 13113568 TTAATCGGCCAAAATAACCATGAGCGGCCATAATATTATAAGTCTCTTCCTCTTGACCAA 13113509
Query 25769 ATTTATATCC 25778
|||| || ||
Sbjct 13113508 ATTTGTAACC 13113499
>seq7
Length=26479886
Score = 527 bits (584), Expect = 2e-145
Identities = 707/979 (72%), Gaps = 6/979 (1%)
Strand=Plus/Minus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
|||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | |
Sbjct 22563167 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 22563108
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572
|||||||| | || ||||||||||| | || | || | | |||||| || ||
Sbjct 22563107 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 22563048
Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632
|| ||||| || || ||||| ||||| ||||||||||| | || | ||| || | |
Sbjct 22563047 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 22562988
Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692
|| || | || ||||||||||||| |||||| |||||| ||| || |||||
Sbjct 22562987 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 22562928
Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752
|||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| |||
Sbjct 22562927 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 22562868
Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812
||||| ||||| || ||| | || || | || |||||| |||| ||||| |
Sbjct 22562867 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 22562808
Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869
|| || | |||| || |||| || ||||||||| ||||| | || ||||||
Sbjct 22562807 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAT 22562751
Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929
|| || || ||||| | ||| || || |||||||||||||| || || |||||||| ||
Sbjct 22562750 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAAT 22562691
Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989
|||| |||||| |||||||| || || || || | ||||||||||||||||||||| |||
Sbjct 22562690 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 22562631
Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049
|| |||| |||||| | ||||| ||||| || ||||||||||| |||||||| ||
Sbjct 22562630 TGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 22562571
Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109
||| ||||| || | ||| || || | |||| |||||||| | || |||| |||
Sbjct 22562570 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAA 22562511
Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169
| | || | | ||||| | ||||| || | ||| || || || || || |||
Sbjct 22562510 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 22562451
Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229
||||| || | | |||||||||||| |||||||| ||||| | ||||| || |||
Sbjct 22562450 CACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAA 22562391
Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289
| || | || || || ||||| || |||||||| || ||||| | || || ||||||
Sbjct 22562390 GTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGC 22562331
Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349
|||||||||||||| ||||| || ||||| ||||| | || || || | |||| | |
Sbjct 22562330 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAA 22562271
Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409
||| || || | | ||||||||| | || || ||||| || | || || |||||
Sbjct 22562270 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTT 22562211
Query 26410 TTTGTACTTGTAACCCAGT 26428
| || || || | |||||
Sbjct 22562210 TCGGTGCTAGTTATCCAGT 22562192
Score = 141 bits (156), Expect = 3e-29
Identities = 212/301 (70%), Gaps = 0/301 (0%)
Strand=Plus/Minus
Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187
||||| | ||||| || | ||| || || || || || |||||||| || | | ||||
Sbjct 22562168 AAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGATGCA 22562109
Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247
|||||||| |||||||| |||| | ||||| || ||| | || | || || ||
Sbjct 22562108 GCTTCCCAAATTGGGTAAAAGTTCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCA 22562049
Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307
||||| || |||||||| || ||||| | || || ||| || |||||||| |||| |||
Sbjct 22562048 GAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACATGCCCACGAATATCATCAATA 22561989
Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367
|| || ||||| ||||| | || || || | |||| | | ||| || || | | |
Sbjct 22561988 TCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA 22561929
Query 26368 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 26427
|||||||| | || || ||||| || | || || ||||| | || || || | ||||
Sbjct 22561928 GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAG 22561869
Query 26428 T 26428
|
Sbjct 22561868 T 22561868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151976113896288
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