Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6 109 4e-19
seq5 95.1 9e-15
seq2 89.7 4e-13
seq1 87.8 1e-12
seq8 86.0 5e-12
>seq6
Length=30401905
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| |||| | ||| | || || ||| |||||| ||||| ||||||||||
Sbjct 26902856 GCCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGC 26902797
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | ||| |||| || | |||||| |||||||| || || ||||| || || | ||
Sbjct 26902796 CAGGGTCCGACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGAGG 26902737
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||||||||| ||||| || ||| | | | || |||| ||| ||
Sbjct 26902736 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACTCGAC 26902677
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | || || || ||||| ||||| || || ||||| ||||||||
Sbjct 26902676 CTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 26902629
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || | ||| ||| || ||||| |||||||||| || | ||
Sbjct 26903074 AGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGT 26903015
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| || ||||| || || ||||| || |||| ||||| ||||||
Sbjct 26903014 CCATCCTCGAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATCCCCTCC 26902955
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||| | ||||
Sbjct 26902954 TTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTATCAGAAGACTCAACCTCAAGCGTA 26902895
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||| || || ||||||||||||||
Sbjct 26902894 ATGGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCAT 26902857
>seq5
Length=25164199
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| |||||||| |||| || | ||| || ||| ||| || || || ||||| || |
Sbjct 21087909 CCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 21087968
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| ||| |||| |||| |||||| || ||||| || || ||||| || || | ||||
Sbjct 21087969 AGGGTTCTGCCGTCCTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGCTGGTCTGGGGGA 21088028
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| || || | | | ||||| | ||| |||
Sbjct 21088029 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGATGACTCGACC 21088088
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | |||||| || || || || | || || || || ||||||||
Sbjct 21088089 TCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 21088135
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | |||||| ||||| || ||| || ||||| ||||| ||||
Sbjct 21087681 CCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCA 21087740
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || |||| |||||| || ||||| || |||| ||| || || | |||
Sbjct 21087741 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCTGGGGGG 21087800
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||| || ||||| || || | | | | || || ||| |||
Sbjct 21087801 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCCGAGCTCTCAACC 21087860
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||||| || || || || | || || ||||||||||||||
Sbjct 21087861 TCAAGGGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAAATCTGCAT 21087907
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||| | || || | ||| | || || ||| ||| || || || ||||| || |
Sbjct 3097261 CGCCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 3097320
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | || |||| || | |||||| ||||| || || || ||||| || |||| ||
Sbjct 3097321 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGG 3097380
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | || |||||||| ||||| || || | | | || || | |||||
Sbjct 3097381 GGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 3097440
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||||| ||| || || || ||||||| || || || || ||||||||| ||
Sbjct 3097441 CCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 3097493
>seq2
Length=36083738
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || || ||||| |||| || | | | || |||| ||||
Sbjct 2262999 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGC 2263058
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || ||||| || || ||||| || |||| ||||| |||||||||||| |||||
Sbjct 2263059 TTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 2263118
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | || || | ||||||||| | || || || || || |||
Sbjct 2263119 GCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTC 2263178
Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767
|| || || ||||| |||||||||
Sbjct 2263179 AATGTCTTCACAAAGATCTGCATC 2263202
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| |||||||| |||| || | ||| || ||| ||| || || || ||||| || |
Sbjct 2262747 CCACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 2262806
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | | | || |||| |||||| || ||||| || || ||||| || || | ||||
Sbjct 2262807 AGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGA 2262866
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| || || | | | || || | |||||||
Sbjct 2262867 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 2262926
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || || || |||| ||| || || || ||||||||
Sbjct 2262927 TCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2262973
>seq1
Length=43445878
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||| | || || | ||||| || || || ||| || || || ||||| || |
Sbjct 9972255 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 9972196
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | || |||| |||| |||||| ||||| || || || ||||| || || | |
Sbjct 9972195 CGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCG 9972136
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | ||||||||||| ||||| || || | | | || || | |||||
Sbjct 9972135 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 9972076
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||||| ||| ||||| || ||||||| || || || || ||||||||| ||
Sbjct 9972075 CCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 9972023
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
||||||| | || || | ||||| || || || ||| || || || ||||| || |
Sbjct 9981463 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 9981404
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
|| | || |||| |||| |||||| ||||| || || || ||||| || || | |
Sbjct 9981403 CGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCG 9981344
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
| | ||||||||||| ||||| || || | | | || || | |||||
Sbjct 9981343 GGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 9981284
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||||| ||| ||||| || ||||||| || || || || ||||||||| ||
Sbjct 9981283 CCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 9981231
>seq8
Length=23026653
Score = 86.0 bits (94), Expect = 5e-12
Identities = 152/221 (69%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || ||| ||| || ||||| ||||| |||| || | ||
Sbjct 4124559 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGT 4124618
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGT--TGATCCGTGGGAACGCCCT 48666
| || || | |||||| ||||| || || || |||| | || || | || || |||||
Sbjct 4124619 CCTTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTCTGCTGGTCTGGGGAAATGCCCT 4124678
Query 48667 CCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCG 48726
||||||| |||||| || ||| | | | ||||| | ||||||||| | |
Sbjct 4124679 CCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGATGACTCCACCTCAAGGG 4124738
Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
| || | || || |||| ||| || ||||| |||||||||
Sbjct 4124739 TGATGGACTTGCCGGTCAGAGTCTTCACAAAGATCTGCATC 4124779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380892621745224
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