Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21] 9,688 sequences; 362,063,720 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq10 594 6e-165 seq8 594 6e-165 seq7 594 6e-165 seq3 113 5e-20 >seq10 Length=17164355 Score = 594 bits (658), Expect = 6e-165 Identities = 705/953 (74%), Gaps = 12/953 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 15960406 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 15960465 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 15960466 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 15960525 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || || || ||||| || ||||||||||| | |||||| ||| || || | Sbjct 15960526 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 15960585 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| | Sbjct 15960586 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 15960645 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 15960646 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 15960702 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||||| || ||| | ||||||||||||||||| ||||||||| || | Sbjct 15960703 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 15960762 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | || || |||||| |||||| | || ||| | |||||||| ||||| Sbjct 15960763 CTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 15960822 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||||||| |||| ||| | || ||||| |||| Sbjct 15960823 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 15960882 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 |||| |||||||| ||||| || || || ||| | || || || ||||||||||| |||| Sbjct 15960883 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 15960942 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 | || || ||||||||||| ||||| | || || ||| | | ||||| ||||| |||| Sbjct 15960943 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 15961002 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 | | || || || | ||||| | || || ||||| ||||||||||| || |||| Sbjct 15961003 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 15961062 Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255 | || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| | Sbjct 15961063 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 15961122 Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 |||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | | Sbjct 15961123 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 15961182 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373 || | |||||||| ||||| || ||||| ||||| ||||||||||| || ||||| Sbjct 15961183 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 15961242 Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 | |||| | || ||| ||||||||| |||||| | ||| | || ||||||| Sbjct 15961243 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 15961299 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 15961300 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 15961352 >seq8 Length=23026653 Score = 594 bits (658), Expect = 6e-165 Identities = 705/953 (74%), Gaps = 12/953 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 17290496 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 17290555 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 17290556 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 17290615 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || || || ||||| || ||||||||||| | |||||| ||| || || | Sbjct 17290616 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 17290675 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| | Sbjct 17290676 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 17290735 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 17290736 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 17290792 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||||| || ||| | ||||||||||||||||| ||||||||| || | Sbjct 17290793 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 17290852 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | || || |||||| |||||| | || ||| | |||||||| ||||| Sbjct 17290853 CTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 17290912 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||||||| |||| ||| | || ||||| |||| Sbjct 17290913 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 17290972 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 |||| |||||||| ||||| || || || ||| | || || || ||||||||||| |||| Sbjct 17290973 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 17291032 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 | || || ||||||||||| ||||| | || || ||| | | ||||| ||||| |||| Sbjct 17291033 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 17291092 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 | | || || || | ||||| | || || ||||| ||||||||||| || |||| Sbjct 17291093 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 17291152 Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255 | || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| | Sbjct 17291153 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 17291212 Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 |||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | | Sbjct 17291213 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 17291272 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373 || | |||||||| ||||| || ||||| ||||| ||||||||||| || ||||| Sbjct 17291273 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 17291332 Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 | |||| | || ||| ||||||||| |||||| | ||| | || ||||||| Sbjct 17291333 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 17291389 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 17291390 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 17291442 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 163120 ATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAA 163179 ||||| ||||| ||||| | || || || | ||||| || || || ||||| ||| Sbjct 13113463 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAA 13113522 Query 163180 GAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCA 163239 |||||||| || ||| | || |||||||| || ||||| || || |||||||| ||||| Sbjct 13113523 GAGACTTATAATATTATGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 13113582 Query 163240 TCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATC 163299 ||| |||||||| ||||| | ||||| ||| | ||||| | | ||| || | || Sbjct 13113583 AGTTTTAACAACTCTCGTTCTTTACACTTTTTCTTGGCTGCTTGGCATGTAGTAGGGATT 13113642 Query 163300 TGGTTCA 163306 ||||||| Sbjct 13113643 TGGTTCA 13113649 >seq7 Length=26479886 Score = 594 bits (658), Expect = 6e-165 Identities = 705/953 (74%), Gaps = 12/953 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 22562225 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 22562284 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 22562285 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 22562344 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || || || ||||| || ||||||||||| | |||||| ||| || || | Sbjct 22562345 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 22562404 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| | Sbjct 22562405 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 22562464 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 22562465 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 22562521 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||||| || ||| | ||||||||||||||||| ||||||||| || | Sbjct 22562522 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 22562581 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | || || |||||| |||||| | || ||| | |||||||| ||||| Sbjct 22562582 CTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 22562641 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||||||| |||| ||| | || ||||| |||| Sbjct 22562642 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 22562701 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 |||| |||||||| ||||| || || || ||| | || || || ||||||||||| |||| Sbjct 22562702 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 22562761 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 | || || ||||||||||| ||||| | || || ||| | | ||||| ||||| |||| Sbjct 22562762 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 22562821 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 | | || || || | ||||| | || || ||||| ||||||||||| || |||| Sbjct 22562822 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 22562881 Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255 | || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| | Sbjct 22562882 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 22562941 Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 |||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | | Sbjct 22562942 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 22563001 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373 || | |||||||| ||||| || ||||| ||||| ||||||||||| || ||||| Sbjct 22563002 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 22563061 Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 | |||| | || ||| ||||||||| |||||| | ||| | || ||||||| Sbjct 22563062 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 22563118 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 22563119 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 22563171 Score = 141 bits (156), Expect = 1e-28 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 22561901 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 22561960 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||| ||| | | | |||| | |||| Sbjct 22561961 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGATATTCGTGGGCATGTTTCTGGTT 22562020 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || || || ||||| || ||||||||||| | |||||| ||| || || | Sbjct 22562021 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 22562080 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | |||| || || || |||||||| ||| || ||||||||||||| || ||||| | Sbjct 22562081 GATTGAACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 22562140 Query 162779 GACCTT 162784 | |||| Sbjct 22562141 GTCCTT 22562146 >seq3 Length=46202548 Score = 113 bits (124), Expect = 5e-20 Identities = 130/171 (76%), Gaps = 7/171 (4%) Strand=Plus/Minus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||||||||| | ||| | |||||||| ||||| || ||||| ||||| ||| Sbjct 10578798 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTC 10578739 Query 163357 AACCAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 ||||| || || ||||| || |||| | || ||| ||||||||| |||||| | Sbjct 10578738 AACCA-TCTGTAGTTGATAGCCAAGGTCGC---GTTATTTATACTTGGGCTGATATCATC 10578683 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 163464 ||| | ||| |||| ||||||||| |||||||| |||||||||||| || Sbjct 10578682 AACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 10578632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553017821430720