Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20longistaminata_20[genbank_20GCA_5F001514335.2_202016-01-21]
9,688 sequences; 362,063,720 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq10 594 6e-165
seq8 594 6e-165
seq7 594 6e-165
seq3 113 5e-20
>seq10
Length=17164355
Score = 594 bits (658), Expect = 6e-165
Identities = 705/953 (74%), Gaps = 12/953 (1%)
Strand=Plus/Plus
Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598
|||| ||||||||||| |||||||||||| ||| | | ||| | || || || |
Sbjct 15960406 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 15960465
Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658
| || ||||| || || |||||||| ||||| |||||||| | || |||||| | ||||
Sbjct 15960466 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 15960525
Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718
| | || || || ||||| || ||||||||||| | |||||| ||| || || |
Sbjct 15960526 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 15960585
Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778
| | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| |
Sbjct 15960586 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 15960645
Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835
| |||| | || | || | |||||| | | || | ||| | | | ||||
Sbjct 15960646 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 15960702
Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895
|| |||||||||| || ||| | ||||||||||||||||| ||||||||| || |
Sbjct 15960703 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 15960762
Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955
| || || | || || |||||| |||||| | || ||| | |||||||| |||||
Sbjct 15960763 CTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 15960822
Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015
|||| | |||||| | || || ||||||||||| |||| ||| | || ||||| ||||
Sbjct 15960823 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 15960882
Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075
|||| |||||||| ||||| || || || ||| | || || || ||||||||||| ||||
Sbjct 15960883 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 15960942
Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135
| || || ||||||||||| ||||| | || || ||| | | ||||| ||||| ||||
Sbjct 15960943 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 15961002
Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195
| | || || || | ||||| | || || ||||| ||||||||||| || ||||
Sbjct 15961003 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 15961062
Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255
| || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| |
Sbjct 15961063 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 15961122
Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315
|||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | |
Sbjct 15961123 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 15961182
Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373
|| | |||||||| ||||| || ||||| ||||| ||||||||||| || |||||
Sbjct 15961183 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 15961242
Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432
| |||| | || ||| ||||||||| |||||| | ||| | || |||||||
Sbjct 15961243 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 15961299
Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
||||||| |||||||| |||||||||||||||||||| || ||||| ||||||
Sbjct 15961300 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 15961352
>seq8
Length=23026653
Score = 594 bits (658), Expect = 6e-165
Identities = 705/953 (74%), Gaps = 12/953 (1%)
Strand=Plus/Plus
Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598
|||| ||||||||||| |||||||||||| ||| | | ||| | || || || |
Sbjct 17290496 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 17290555
Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658
| || ||||| || || |||||||| ||||| |||||||| | || |||||| | ||||
Sbjct 17290556 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 17290615
Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718
| | || || || ||||| || ||||||||||| | |||||| ||| || || |
Sbjct 17290616 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 17290675
Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778
| | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| |
Sbjct 17290676 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 17290735
Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835
| |||| | || | || | |||||| | | || | ||| | | | ||||
Sbjct 17290736 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 17290792
Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895
|| |||||||||| || ||| | ||||||||||||||||| ||||||||| || |
Sbjct 17290793 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 17290852
Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955
| || || | || || |||||| |||||| | || ||| | |||||||| |||||
Sbjct 17290853 CTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 17290912
Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015
|||| | |||||| | || || ||||||||||| |||| ||| | || ||||| ||||
Sbjct 17290913 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 17290972
Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075
|||| |||||||| ||||| || || || ||| | || || || ||||||||||| ||||
Sbjct 17290973 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 17291032
Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135
| || || ||||||||||| ||||| | || || ||| | | ||||| ||||| ||||
Sbjct 17291033 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 17291092
Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195
| | || || || | ||||| | || || ||||| ||||||||||| || ||||
Sbjct 17291093 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 17291152
Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255
| || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| |
Sbjct 17291153 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 17291212
Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315
|||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | |
Sbjct 17291213 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 17291272
Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373
|| | |||||||| ||||| || ||||| ||||| ||||||||||| || |||||
Sbjct 17291273 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 17291332
Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432
| |||| | || ||| ||||||||| |||||| | ||| | || |||||||
Sbjct 17291333 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 17291389
Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
||||||| |||||||| |||||||||||||||||||| || ||||| ||||||
Sbjct 17291390 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 17291442
Score = 116 bits (128), Expect = 4e-21
Identities = 138/187 (74%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 163120 ATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAA 163179
||||| ||||| ||||| | || || || | ||||| || || || ||||| |||
Sbjct 13113463 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAA 13113522
Query 163180 GAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCA 163239
|||||||| || ||| | || |||||||| || ||||| || || |||||||| |||||
Sbjct 13113523 GAGACTTATAATATTATGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 13113582
Query 163240 TCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATC 163299
||| |||||||| ||||| | ||||| ||| | ||||| | | ||| || | ||
Sbjct 13113583 AGTTTTAACAACTCTCGTTCTTTACACTTTTTCTTGGCTGCTTGGCATGTAGTAGGGATT 13113642
Query 163300 TGGTTCA 163306
|||||||
Sbjct 13113643 TGGTTCA 13113649
>seq7
Length=26479886
Score = 594 bits (658), Expect = 6e-165
Identities = 705/953 (74%), Gaps = 12/953 (1%)
Strand=Plus/Plus
Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598
|||| ||||||||||| |||||||||||| ||| | | ||| | || || || |
Sbjct 22562225 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 22562284
Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658
| || ||||| || || |||||||| ||||| |||||||| | || |||||| | ||||
Sbjct 22562285 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 22562344
Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718
| | || || || ||||| || ||||||||||| | |||||| ||| || || |
Sbjct 22562345 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 22562404
Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778
| | ||||| || || || |||||||| ||| || ||||||||||||| || ||||| |
Sbjct 22562405 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 22562464
Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835
| |||| | || | || | |||||| | | || | ||| | | | ||||
Sbjct 22562465 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 22562521
Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895
|| |||||||||| || ||| | ||||||||||||||||| ||||||||| || |
Sbjct 22562522 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 22562581
Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955
| || || | || || |||||| |||||| | || ||| | |||||||| |||||
Sbjct 22562582 CTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 22562641
Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015
|||| | |||||| | || || ||||||||||| |||| ||| | || ||||| ||||
Sbjct 22562642 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 22562701
Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075
|||| |||||||| ||||| || || || ||| | || || || ||||||||||| ||||
Sbjct 22562702 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 22562761
Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135
| || || ||||||||||| ||||| | || || ||| | | ||||| ||||| ||||
Sbjct 22562762 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 22562821
Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195
| | || || || | ||||| | || || ||||| ||||||||||| || ||||
Sbjct 22562822 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 22562881
Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255
| || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| |
Sbjct 22562882 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 22562941
Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315
|||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | |
Sbjct 22562942 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 22563001
Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373
|| | |||||||| ||||| || ||||| ||||| ||||||||||| || |||||
Sbjct 22563002 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 22563061
Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432
| |||| | || ||| ||||||||| |||||| | ||| | || |||||||
Sbjct 22563062 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 22563118
Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
||||||| |||||||| |||||||||||||||||||| || ||||| ||||||
Sbjct 22563119 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 22563171
Score = 141 bits (156), Expect = 1e-28
Identities = 179/246 (73%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598
|||| ||||||||||| |||||||||||| ||| | | ||| | || || || |
Sbjct 22561901 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 22561960
Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658
| || ||||| || || |||||||| ||||| |||| ||| | | | |||| | ||||
Sbjct 22561961 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGATATTCGTGGGCATGTTTCTGGTT 22562020
Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718
| | || || || ||||| || ||||||||||| | |||||| ||| || || |
Sbjct 22562021 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 22562080
Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778
| | |||| || || || |||||||| ||| || ||||||||||||| || ||||| |
Sbjct 22562081 GATTGAACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCG 22562140
Query 162779 GACCTT 162784
| ||||
Sbjct 22562141 GTCCTT 22562146
>seq3
Length=46202548
Score = 113 bits (124), Expect = 5e-20
Identities = 130/171 (76%), Gaps = 7/171 (4%)
Strand=Plus/Minus
Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356
|| ||||||||||| | ||| | |||||||| ||||| || ||||| ||||| |||
Sbjct 10578798 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTC 10578739
Query 163357 AACCAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413
||||| || || ||||| || |||| | || ||| ||||||||| |||||| |
Sbjct 10578738 AACCA-TCTGTAGTTGATAGCCAAGGTCGC---GTTATTTATACTTGGGCTGATATCATC 10578683
Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 163464
||| | ||| |||| ||||||||| |||||||| |||||||||||| ||
Sbjct 10578682 AACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 10578632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553017821430720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |